Burkholderia cenocepacia K56-2, WQ49_RS04280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01392
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01392
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00354 IPR000843 LacI-type HTH domain 5 76 2.7E-28
CDD cd01392 HTH_LacI IPR000843 LacI-type HTH domain 9 61 7.72373E-15
Gene3D G3DSA:3.40.50.2300 169 305 3.3E-58
Gene3D G3DSA:1.10.260.40 7 64 2.5E-20
ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 -
SUPERFAMILY SSF53822 IPR028082 Periplasmic binding protein-like I 66 350 9.42E-51
ProSiteProfiles PS50932 LacI-type HTH domain profile. IPR000843 LacI-type HTH domain 6 61 28.467
SUPERFAMILY SSF47413 IPR010982 Lambda repressor-like, DNA-binding domain superfamily 5 64 3.44E-15
Pfam PF00356 Bacterial regulatory proteins, lacI family IPR000843 LacI-type HTH domain 7 53 2.3E-15
Pfam PF13377 Periplasmic binding protein-like domain 177 345 2.4E-27
Gene3D G3DSA:3.40.50.2300 67 321 3.3E-58

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.