Burkholderia cenocepacia AU 1054, BCEN_RS14610

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF06445 GyrI-like small molecule binding domain IPR029442 GyrI-like small molecule binding domain 138 293 8.4E-33
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 40 118 5.5E-16
ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. IPR018062 HTH domain AraC-type, conserved site 71 113 -
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 101 117 3.9E-5
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 70 121 6.27E-10
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 21 119 25.169
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 20 63 8.96E-6
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 86 101 3.9E-5
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 34 117 1.0E-18
SMART SM00871 IPR010499 Bacterial transcription activator, effector binding 138 293 7.2E-40
Gene3D G3DSA:3.20.80.10 IPR011256 Regulatory factor, effector binding domain superfamily 138 293 3.3E-42
SUPERFAMILY SSF55136 IPR011256 Regulatory factor, effector binding domain superfamily 139 293 4.19E-37
Gene3D G3DSA:1.10.10.60 15 123 1.4E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.