Burkholderia cenocepacia AU 1054, BCEN_RS14585

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 7 63 3.3E-17
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 88 291 5.8E-53
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 1 59 25.256
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 3 85 3.61E-21
Gene3D G3DSA:3.40.190.10 91 289 3.8E-70
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 3 89 6.8E-26
SUPERFAMILY SSF53850 89 292 4.03E-52
CDD cd08476 PBP2_CrgA_like_7 92 288 1.93222E-120
Gene3D G3DSA:3.40.190.10 162 263 3.8E-70

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.