Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006352 | DNA-templated transcription, initiation |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02479
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02479
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02479
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02479
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02479
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
ProSitePatterns | PS00715 | Sigma-70 factors family signature 1. | IPR000943 | RNA polymerase sigma-70 | 40 | 53 | - |
Gene3D | G3DSA:1.20.140.160 | 84 | 236 | 1.5E-44 | |||
TIGRFAM | TIGR02479 | FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family | IPR012845 | RNA polymerase sigma factor, FliA/WhiG | 14 | 233 | 3.3E-87 |
ProSitePatterns | PS00716 | Sigma-70 factors family signature 2. | IPR000943 | RNA polymerase sigma-70 | 203 | 229 | - |
Pfam | PF04542 | Sigma-70 region 2 | IPR007627 | RNA polymerase sigma-70 region 2 | 14 | 85 | 1.1E-15 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 186 | 198 | 1.4E-11 |
CDD | cd06171 | Sigma70_r4 | 176 | 230 | 1.12014E-10 | ||
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 218 | 229 | 1.4E-11 |
TIGRFAM | TIGR02937 | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family | IPR014284 | RNA polymerase sigma-70 like domain | 12 | 233 | 8.8E-34 |
Hamap | MF_00962 | RNA polymerase sigma factor FliA [fliA]. | IPR028617 | RNA polymerase sigma factor FliA | 2 | 236 | 63.637 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 40 | 53 | 1.4E-11 |
SUPERFAMILY | SSF88659 | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 86 | 159 | 2.79E-14 | |
SUPERFAMILY | SSF88659 | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 151 | 237 | 7.48E-21 | |
SUPERFAMILY | SSF88946 | IPR013325 | RNA polymerase sigma factor, region 2 | 3 | 85 | 6.02E-23 | |
Pfam | PF04545 | Sigma-70, region 4 | IPR007630 | RNA polymerase sigma-70 region 4 | 182 | 231 | 1.3E-14 |
Gene3D | G3DSA:1.10.1740.10 | 2 | 82 | 1.5E-28 | |||
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 64 | 72 | 1.4E-11 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 203 | 218 | 1.4E-11 |
Pfam | PF04539 | Sigma-70 region 3 | IPR007624 | RNA polymerase sigma-70 region 3 | 94 | 139 | 6.3E-10 |
PIRSF | PIRSF000770 | IPR000943 | RNA polymerase sigma-70 | 1 | 238 | 2.1E-38 |