Burkholderia cenocepacia AU 1054, BCEN_RS00015

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0008033 tRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01102
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01102
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01266
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01102
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055114 oxidation-reduction process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01102
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01102
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc tRNA-uridine 2-thiolation (bacteria) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal 244 636 2.7E-116
Gene3D G3DSA:3.40.50.150 8 217 1.1E-47
Gene3D G3DSA:3.50.50.60 IPR036188 FAD/NAD(P)-binding domain superfamily 242 634 1.3E-119
SUPERFAMILY SSF51905 IPR036188 FAD/NAD(P)-binding domain superfamily 243 634 3.17E-32
Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase IPR008471 MnmC-like methyltransferase 119 213 1.7E-10
Pfam PF01266 FAD dependent oxidoreductase IPR006076 FAD dependent oxidoreductase 244 607 6.2E-41
Gene3D G3DSA:3.30.9.10 328 547 1.3E-119
Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 6 632 21.641
SUPERFAMILY SSF54373 457 530 2.88E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.