Burkholderia cenocepacia K56-2Valvano, BURCENK562V_RS18545 (cepR2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
IEP
Inferred from Expression Pattern
ECO:0000231
quantitative polymerase chain reaction evidence
19201791 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
IEP
Inferred from Expression Pattern
ECO:0000275
expression microarray evidence used in manual assertion
19201791 Reviewed by curator
Biological Process GO:0009372 quorum sensing
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
16041013 Reviewed by curator
Biological Process GO:0009372 quorum sensing
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
19201791 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00038
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSitePatterns PS00622 LuxR-type HTH domain signature. IPR000792 Transcription regulator LuxR, C-terminal 190 217 -
Pfam PF03472 Autoinducer binding domain IPR005143 Transcription factor LuxR-like, autoinducer-binding domain 19 159 9.8E-32
ProSiteProfiles PS50043 LuxR-type HTH domain profile. IPR000792 Transcription regulator LuxR, C-terminal 168 234 22.557
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 190 206 2.7E-9
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 176 230 1.15491E-18
SMART SM00421 IPR000792 Transcription regulator LuxR, C-terminal 173 230 7.0E-18
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 176 229 1.7E-16
SUPERFAMILY SSF75516 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 4 162 2.22E-35
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 171 236 6.3E-26
SUPERFAMILY SSF46894 IPR016032 Signal transduction response regulator, C-terminal effector 161 236 1.05E-16
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 206 218 2.7E-9
Gene3D G3DSA:3.30.450.80 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 1 170 2.0E-67
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 176 190 2.7E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.