Burkholderia cenocepacia K56-2Valvano, BURCENK562V_RS30450 (rpoE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016987 sigma factor activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniprotKB:Q0P6M2
 ECO:0000250
sequence similarity evidence used in manual assertion		 18227267 Reviewed by curator
Biological Process GO:0071472 cellular response to salt stress
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 18227267 Reviewed by curator
Biological Process GO:0034605 cellular response to heat
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 18227267 Reviewed by curator
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06171 Sigma70_r4 131 183 7.18945E-14
Gene3D G3DSA:1.10.1740.10 1 122 6.1E-42
CDD cd17305 PIPKc_PIP5KII 24 87 0.00896009
Pfam PF08281 Sigma-70, region 4 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 134 182 6.2E-19
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 21 186 1.6E-35
ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. IPR000838 RNA polymerase sigma factor 70, ECF, conserved site 47 78 -
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 123 192 1.4E-23
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 124 187 1.81E-18
TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE IPR014286 RNA polymerase sigma-70 RpoE type 1 191 4.0E-98
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 25 92 5.2E-20
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 3 109 1.02E-32

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.