Log of Annotation Updates

2887 annotation updates returned 12345678910..29Next
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Date Locus Tag Strain Description Submitter
Apr 30, 2018 BCAL0909 Burkholderia cenocepacia J2315 New gene name: ybeY. New product name: rRNA maturation RNAse YbeY. New product name confidence: Class 2. New PubMed ID: 20807199. New PubMed ID: 23638028. New PubMed ID: 19181801. New comment: .Annotation transferred from: UniprotKB:P0A898. Bart Devreese. Ghent University, Belgium
Apr 30, 2018 WQ49_RS13910 Burkholderia cenocepacia K56-2 New gene name: paaA. New product name: PaaA. New product name confidence: Class 1. New PubMed ID: 18776009. New PubMed ID: 21247899. New comment: Putative monooxygenase subunit of ring 1,2-phenylacetyl-CoA epoxidase . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS13905 Burkholderia cenocepacia K56-2 New gene name: paaB. New product name: PaaB. New product name synonym: putative subunit PaaB of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 16997993. New comment: . Annotation transferred from: UniProtKB:P76078. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS05095 Burkholderia cenocepacia K56-2Valvano New product name synonym: putative subunit PaaB of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 16997993. New comment: . Annotation transferred from: UniProtKB:P76078. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS13900 Burkholderia cenocepacia K56-2 New gene name: paaC. New product name: PaaC. New product name synonym: putative subunit PaaC, structural subunit, of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 21247899. New comment: . Annotation transferred from: UniProtKB:P76079. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS05100 Burkholderia cenocepacia K56-2Valvano New gene name: paaC. New product name: PaaC. New product name synonym: putative subunit PaaC, structural subunit, of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 21247899. New comment: . Annotation transferred from: UniProtKB:P76079. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS13890 Burkholderia cenocepacia K56-2 New gene name: paaE. New product name: PaaE. New product name synonym: putative reductase subunit of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 18776009. New PubMed ID: 21247899. New comment: . Annotation transferred from: UniProtKB:P76081. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11495 Burkholderia cenocepacia K56-2 New gene name: paaF. New product name: PaaF. New product name synonym: putative 2,3-dehydroadipyl-CoA hydratase. New product name confidence: Class 2. New PubMed ID: 18776009. New PubMed ID: 20660314. New comment: . Annotation transferred from: UniProtKB:P76082. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11510 Burkholderia cenocepacia K56-2 New gene name: paaG. New product name: PaaG. New product name synonym: putative 1,2-epoxyphenylacetyl-CoA isomerase/ 3,4-dehydroadipyl-CoA isomerase. New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P77467. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28550 Burkholderia cenocepacia K56-2Valvano New gene name: paaG. New product name: PaaG. New product name synonym: putative 1,2-epoxyphenylacetyl-CoA isomerase/ 3,4-dehydroadipyl-CoA isomerase. New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P77467. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS04260 Burkholderia cenocepacia K56-2 New gene name: paaH. New product name: PaaH. New product name synonym: putative 3-hydroxyadipyl-CoA dehydrogenase. New product name confidence: Class 2. New PubMed ID: 20660314. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P76083. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS11895 Burkholderia cenocepacia K56-2Valvano New gene name: paaH. New product name: PaaH. New product name synonym: putative 3-hydroxyadipyl-CoA dehydrogenase. New product name confidence: Class 2. New PubMed ID: 20660314. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P76083. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11505 Burkholderia cenocepacia K56-2 New gene name: paaJ. New product name: PaaJ. New product name synonym: putative beta-ketothiolase (3-oxo-5,6-dehydrosuberyl-CoA thiolase). New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P0C7L2. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28555 Burkholderia cenocepacia K56-2Valvano New gene name: paaJ. New product name: PaaJ. New product name synonym: putative beta-ketothiolase (3-oxo-5,6-dehydrosuberyl-CoA thiolase). New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P0C7L2. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11520 Burkholderia cenocepacia K56-2 New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28540 Burkholderia cenocepacia K56-2Valvano New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BCAL0404 Burkholderia cenocepacia J2315 New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS04255 Burkholderia cenocepacia K56-2 New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS11890 Burkholderia cenocepacia K56-2Valvano New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BCAM1711 Burkholderia cenocepacia J2315 New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11515 Burkholderia cenocepacia K56-2 New gene name: paaI. New product name: PaaI. New product name synonym: putative phenylacetatyl-CoA thioesterase. New product name confidence: Class 2. New PubMed ID: 16464851. New comment: . Annotation transferred from: UniProtKB:P76084. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS09445 Burkholderia cenocepacia K56-2 New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P232. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS32320 Burkholderia cenocepacia K56-2Valvano New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P232. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BCAS0364 Burkholderia cenocepacia J2315 New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P232. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11500 Burkholderia cenocepacia K56-2 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28560 Burkholderia cenocepacia K56-2Valvano New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BCAL0408 Burkholderia cenocepacia J2315 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 22, 2009 BCAM0188 Burkholderia cenocepacia J2315 New gene name: cepR2. New product name: CepR2. New product name confidence: Class 1. New evidence reference (PMID): 19201791. Eoin O'Grady, University of Calgary Health Sciences Centre, Calgary, Alberta
Jan 14, 2010 BCAS0225 Burkholderia cenocepacia J2315 New gene name: shvR. New product name: shiny variant regulator, ShvR. New product name confidence: Class 1. New evidence reference (PMID): 19761612. Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
Jan 14, 2010 BCAS0223 Burkholderia cenocepacia J2315 New gene name: afcC. New product name: AfcC. New product name confidence: Class 2. New evidence reference (PMID): 9758823. Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
Apr 30, 2018 AK34_RS09175 Burkholderia dolosa AU0158 New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P232. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BP1026B_I0260 Burkholderia pseudomallei 1026b New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BPSL3041 Burkholderia pseudomallei K96243 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 I35_RS02045 Burkholderia cenocepacia H111 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BMAA0543 Burkholderia mallei ATCC 23344 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BCEP18194_RS08230 Burkholderia lata 383 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BTH_I2900 Burkholderia thailandensis E264; ATCC 700388 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BMAA0543 Burkholderia mallei ATCC 23344 New PubMed ID: 21296885. New PubMed ID: 18776009. Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 bglu_1g04490 Burkholderia glumae BGR1 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 AK34_RS25965 Burkholderia dolosa AU0158 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.. Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Jan 25, 2011 BCAM2107 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 17371508. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BPSL2865 Burkholderia pseudomallei K96243 New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 12832453. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BURPS668_3322 Burkholderia pseudomallei 668 New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 12832453. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BURPS1710b_3366 Burkholderia pseudomallei 1710b New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 12832453. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BURPS1106A_3356 Burkholderia pseudomallei 1106a New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 12832453. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL2643 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New subcellular localization: Periplasmic. New subcellular localization confidence: Class 1. New EC Number: 1.15.1.1. New GO Accession: GO:0004784(IDA). New PubMed reference: 17325048. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL2829 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New subcellular localization: Periplasmic. New subcellular localization confidence: Class 1. New EC Number: 3.4.21.107. New PubMed reference: 17220310. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2165 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New GO Accession: GO:0008800(ISS). New PubMed reference: 19075063. New PubMed reference: 9371340. New PubMed reference: 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM0393 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO Accession: GO:0008800(ISS). New PubMed reference: 9333046. New PubMed reference: 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM1779 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO Accession: GO:0008800(ISS). New PubMed reference: 12821450. New PubMed reference: 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAS0156 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO Accession: GO:0008800(ISS). New PubMed reference: 14982755. New PubMed reference: 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 Bxe_A1420 Burkholderia xenovorans LB400 New product name confidence: Class 2. New comment : Expressed as a hexa-histidine-tagged fusion in Escherichia coli BL21 Star (DE3). ALDHC in complex with NADPH bound in the cofactor binding pocket and an ordered fragment of a polyethylene glycol molecule bound in the substrate tunnel, to 1.6 A resolution. Belongs to space group P1. The ALDHC monomer comprises three distinct domains, an N-terminal cofactor (NAD/P+)-binding domain, a catalytic domain, and an oligomerization domain. New EC Number: 1.2.1.5. New GO Accession: GO:0004030(IDA). New PubMed reference: 18462753. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 Bxe_A1420 Burkholderia xenovorans LB400 New comment : ALDHC is preferentially active towards linear medium-chain to long-chain aldehydes as compared to branched-chain, short-chain or aromatic aldehydes. Reorientation of an extended loop (Asn478-Pro490) is responsible for the constricted structure of the substrate tunnel, with the side chain of Asn478 imposing steric restrictions on branched-chain and aromatic aldehydes. A key glycine (Gly104) positioned at the mouth of the tunnel allows for maximum tunnel depth required to bind the linear medium to long aliphatic chain of the native substrate. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2107 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 17371508. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BPSL2865 Burkholderia pseudomallei K96243 New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 12832453. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BURPS668_3322 Burkholderia pseudomallei 668 New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 12832453. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BURPS1710b_3366 Burkholderia pseudomallei 1710b New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 12832453. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BURPS1106A_3356 Burkholderia pseudomallei 1106a New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 12832453. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL2643 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New subcellular localization: Periplasmic. New subcellular localization confidence: Class 1. New EC Number: 1.15.1.1. New GO accession: GO:0004784 [IDA]. New evidence reference (PMID): 17325048. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL2829 Burkholderia cenocepacia J2315 New subcellular localization: Periplasmic. New subcellular localization confidence: Class 1. New EC Number: 3.4.21.107. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2165 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 19075063. New evidence reference (PMID): 9371340. New evidence reference (PMID): 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM0393 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 9333046. New evidence reference (PMID): 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM1779 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 12821450. New evidence reference (PMID): 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAS0156 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 14982755. New evidence reference (PMID): 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 Bxe_A1420 Burkholderia xenovorans LB400 New product name confidence: Class 2. New EC Number: 1.2.1.5. New GO accession: GO:0004030 [IDA]. New evidence reference (PMID): 18462753. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 22, 2009 Bxe_A0793 Burkholderia xenovorans LB400 New gene name: fusA. New product name confidence: Class 1. New evidence reference (PMID): 10625618. New evidence reference (PMID): 17522847. Literature review. Geoffrey L. Winsor, Simon Fraser University
Apr 22, 2009 BCAM0857 Burkholderia cenocepacia J2315 New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 90% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0859 Burkholderia cenocepacia J2315 New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 92% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM1870 Burkholderia cenocepacia J2315 New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New homology: 100% identity to CepI[B. cepacia K56-2] [accession number AF019654]. New evidence reference (PMID): 11402012. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM1868 Burkholderia cenocepacia J2315 New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 99% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL0998 Burkholderia cenocepacia J2315 New gene name: ecfA1. New product name: EcfA1. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL2872 Burkholderia cenocepacia J2315 New gene name: ecfA2. New product name: EcfA2. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL3478 Burkholderia cenocepacia J2315 New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL1369 Burkholderia cenocepacia J2315 New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL2360 Burkholderia cenocepacia J2315 New gene name: ecfD. New product name: sigma factor 70 EcfD. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL2462 Burkholderia cenocepacia J2315 New gene name: ecfE. New product name: sigma factor 70 EcfE. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL3151 Burkholderia cenocepacia J2315 New gene name: ecfF. New product name: sigma factor 70 EcfF. New product name confidence: Class 2. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL1947 Burkholderia cenocepacia J2315 New gene name: ecfG. New product name: sigma factor 70 EcfG. New product name confidence: Class 2. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM1661 Burkholderia cenocepacia J2315 New gene name: ecfH. New product name: sigma factor 70 EcfH. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL1688 Burkholderia cenocepacia J2315 New gene name: ecfI. New product name: sigma factor 70 EcfI. New product name confidence: Class 2. New evidence reference (PMID): 17784978. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0001 Burkholderia cenocepacia J2315 New gene name: ecfJ. New product name: sigma factor 70 EcfJ. New product name confidence: Class 2. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM2748 Burkholderia cenocepacia J2315 New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0849 Burkholderia cenocepacia J2315 New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL3486 Burkholderia cenocepacia J2315 New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL2739 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New evidence reference (PMID): 10625618. New evidence reference (PMID): 17522847. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0004 Burkholderia cenocepacia J2315 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. cencoepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0005 Burkholderia cenocepacia J2315 New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New homology: 97% identity to repA[B. cenocepacia AU 1054]. New evidence reference (PMID): 18328098. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0918 Burkholderia cenocepacia J2315 New gene name: sigE. New product name: sigma factor 70 sigE. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM2371 Burkholderia cenocepacia J2315 New gene name: sigI. New product name: sigma factor 70 sigI. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM1259 Burkholderia cenocepacia J2315 New gene name: sigJ. New product name: sigma factor 70 SigJ. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL0144 Burkholderia cenocepacia J2315 New gene name: sigK. New product name: sigma factor 70 SigK. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL1892 Burkholderia cenocepacia J2315 New gene name: sigL. New product name: sigma factor 70 SigL. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL0787 Burkholderia cenocepacia J2315 New gene name: sigM. New product name: sigma factor 70 SigM. New product name confidence: Class 2. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL3119 Burkholderia cenocepacia J2315 New product name: WbiI. New product name confidence: Class 2. New homology: 67.8% identity to whpM[P. aeruginosa PAO1]. New homology: 99% identity to WbiI[accession number AY523838]. New evidence reference (PMID): 15364998. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM2307 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New evidence reference (PMID): 16790782. Literature review. Raymond C. Lo, Simon Fraser University
Sep 15, 2008 Bcen_0051 New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 86% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcen_0060 New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New homology: 90% identity to ecfB[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcen_0408 New gene name: wbiI. New homology: 100% identity to wbiI[accession number AY523838]. New evidence reference (PMID): 15364998. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcen_0647 New gene name: ecfA1. New product name: sigma factor 70 EcfA1. New product name confidence: Class 1. New homology: 90% identity to EcfA1[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcen_0877 New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New homology: 94% identity to ecfC[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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