Log of Annotation Updates

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Date Locus Tag Strain Description Submitter
Apr 30, 2018 BCAM0334 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10229_2085 Burkholderia mallei NCTC 10229 New gene name: bprB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1522. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2158 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1496 Burkholderia pseudomallei K96243 New gene name: tssB-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2078 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P10441. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0865 Burkholderia cenocepacia J2315 New PubMed ID: 19948863. New comment: Removed gene name bceL because it was incorrectly assigned in a previous study. Analysis of other Burkholderia genomes including B. phytofirmans and B. xenovorans indicated that the protein was absent from the bce cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0515 Burkholderia pseudomallei K96243 New gene name: tssI-6. New product name: type VI secretion system protein TssI-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0335 Burkholderia cenocepacia J2315 New gene name: virD4. New product name: pseudogene (virD4). New PubMed ID: 18931103. New comment: The virD4 homologue (BCAM0335) contains a frameshift mutation (PMID: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMAA1518.1 New gene name: bprB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1522. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2159 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1497 Burkholderia pseudomallei K96243 New gene name: tssC-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2154 Burkholderia cenocepacia J2315 New gene name: lpxH. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P43341. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM1003 Burkholderia cenocepacia J2315 New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0516 Burkholderia pseudomallei K96243 New gene name: tssH-6. New product name: type VI secretion system protein TssH-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19230 Burkholderia cenocepacia K56-2Valvano New gene name: virB2. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BTH_II0843 Burkholderia thailandensis E264 ATCC 700388 New gene name: bprA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1530. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2168 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1498 Burkholderia pseudomallei K96243 New gene name: tssD-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2759 Burkholderia cenocepacia J2315 New gene name: lpxK. New product name: LpxK. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P27300. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS06470 Burkholderia dolosa AU0158 New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0517 Burkholderia pseudomallei K96243 New gene name: tssG-6. New product name: type VI secretion system protein TssG-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19235 Burkholderia cenocepacia K56-2Valvano New gene name: virB3. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1530 Burkholderia pseudomallei K96243 New product name confidence: Class 1. New PubMed ID: 20951592. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2169 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1499 Burkholderia pseudomallei K96243 New gene name: tssE-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0508 Burkholderia cenocepacia J2315 New gene name: lpxL. New product name: lipid A biosynthesis myristoyl acyltransferase LpxL. New product name confidence: Class 1. New PubMed ID: 28085228. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1689 Burkholderia pseudomallei K96243 New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0518 Burkholderia pseudomallei K96243 New gene name: tssF-6. New product name: type VI secretion system protein TssF-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19240 Burkholderia cenocepacia K56-2Valvano New gene name: virB4. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS668_A2160 Burkholderia pseudomallei 668 New gene name: bprA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1530. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2192 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1500 Burkholderia pseudomallei K96243 New gene name: tssF-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0788 Burkholderia cenocepacia J2315 New gene name: pagL. New product name: Lipid A deacylase PagL. New product name confidence: Class 1. New PubMed ID: 28085228. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II0689 Burkholderia thailandensis E264 ATCC 700388 New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0519 Burkholderia pseudomallei K96243 New gene name: tssE-6. New product name: type VI secretion system protein TssE-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19245 Burkholderia cenocepacia K56-2Valvano New gene name: virB6. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1710b_A056 Burkholderia pseudomallei 1710b New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1530. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2197 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1501 Burkholderia pseudomallei K96243 New gene name: tssG-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2408 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 8809774. Annotation transferred from: UniProtKB:P60752. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 bglu_1g06560 Burkholderia glumae BGR1 New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0520 Burkholderia pseudomallei K96243 New gene name: tssD-6. New product name: type VI secretion system protein TssD-6. New gene name synonym: hcp3. New product name synonym: hemolysin-coregulated protein Hcp3. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19250 Burkholderia cenocepacia K56-2Valvano New gene name: virB5. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1106A_A207 Burkholderia pseudomallei 1106a New gene name: bprA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1530. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2203 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1502 Burkholderia pseudomallei K96243 New gene name: tssH-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS21445 Burkholderia cenocepacia K56-2Valvano New gene name: lpxA. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P0A722. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_4613 Burkholderia multivorans ATCC 17616 New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0521 Burkholderia pseudomallei K96243 New gene name: tssC-6. New product name: type VI secretion system protein TssC-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19255 Burkholderia cenocepacia K56-2Valvano New gene name: virB8. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10247_A0755 Burkholderia mallei NCTC 10247 New gene name: bprA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1530. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2204 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1503 Burkholderia pseudomallei K96243 New gene name: tssI-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS00665 Burkholderia cenocepacia K56-2Valvano New gene name: lpxC. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P0A725. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS16930 Burkholderia ambifaria AMMD New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0522 Burkholderia pseudomallei K96243 New gene name: tssB-6. New product name: type VI secretion system protein TssB-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19260 Burkholderia cenocepacia K56-2Valvano New gene name: virB9. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10229_2075 Burkholderia mallei NCTC 10229 New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1530. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2235 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1504 Burkholderia pseudomallei K96243 New gene name: tagAB-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS21435 Burkholderia cenocepacia K56-2Valvano New gene name: lpxD. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P21645. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS21090 Burkholderia cenocepacia H111 New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0523 Burkholderia pseudomallei K96243 New gene name: tssA-6. New product name: type VI secretion system protein TssA-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19265 Burkholderia cenocepacia K56-2Valvano New gene name: virB10. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMAA1529 New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1530. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2239 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1505 Burkholderia pseudomallei K96243 New gene name: tagB-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS21450 Burkholderia cenocepacia K56-2Valvano New gene name: lpxB. New product name confidence: Class 2. New PubMed ID: 15610978. New comment: .Annotation transferred from: UniProtKB:P10441. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS08345 Burkholderia cenocepacia K56-2Valvano New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0524 Burkholderia pseudomallei K96243 New gene name: tagE-6. New product name: type VI secretion system-associated protein TagE-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19270 Burkholderia cenocepacia K56-2Valvano New gene name: virB11. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BTH_II0848 Burkholderia thailandensis E264 ATCC 700388 New gene name: bopE. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1525. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2245 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1506 Burkholderia pseudomallei K96243 New gene name: tagC-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCEP18194_RS17050 Burkholderia lata 383 New gene name: lpxH. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P43341. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCEP18194_RS33325 Burkholderia lata 383 New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0525 Burkholderia pseudomallei K96243 New gene name: tagF-6. New product name: type VI secretion system-associated protein TagF-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19275 Burkholderia cenocepacia K56-2Valvano New gene name: virD4. New product name: type IV secretion system-coupling protein VirD4. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1525 Burkholderia pseudomallei K96243 New product name confidence: Class 1. New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0000279 .New subcellular localization PMID: 12897019 .New PubMed ID: 20951592. New PubMed ID: 12897019. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2250 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1507 Burkholderia pseudomallei K96243 New gene name: tagD-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS01875 Burkholderia cenocepacia K56-2Valvano New gene name: lpxK. New product name: LpxK. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P27300. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM1004 Burkholderia cenocepacia J2315 New gene name: bceN. New product name: GDP-D-mannose 4,6-dehydratase BceN. New product name confidence: Class 1. New PubMed ID: 23460819. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0526 Burkholderia pseudomallei K96243 New gene name: tssM-6. New product name: type VI secretion system protein TssM-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34640 Burkholderia cenocepacia K56-2Valvano New gene name: ptwG. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS668_A2155 Burkholderia pseudomallei 668 New gene name: bopE. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1525. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2251 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1508 Burkholderia pseudomallei K96243 New gene name: tssJ-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS04580 Burkholderia cenocepacia K56-2Valvano New gene name: lpxL. New product name: lipid A biosynthesis myristoyl acyltransferase LpxL. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: BGD:BCAL0508. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS06465 Burkholderia dolosa AU0158 New gene name: bceN. New product name: GDP-D-mannose 4,6-dehydratase BceN. New product name confidence: Class 2. New PubMed ID: 23460819. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:BCAM1004. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0527 Burkholderia pseudomallei K96243 New gene name: tssL-6. New product name: type VI secretion system protein TssL-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34645 Burkholderia cenocepacia K56-2Valvano New gene name: ptwH. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1710b_A056 Burkholderia pseudomallei 1710b New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1525. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL2257 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1509 Burkholderia pseudomallei K96243 New gene name: tssK-5. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS03200 Burkholderia cenocepacia K56-2Valvano New gene name: pagL. New product name: Lipid A deacylase PagL. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: BGD:BCAL0788. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1688 Burkholderia pseudomallei K96243 New gene name: bceN. New product name: GDP-D-mannose 4,6-dehydratase BceN. New product name confidence: Class 2. New PubMed ID: 23460819. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:BCAM1004. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0528 Burkholderia pseudomallei K96243 New gene name: tssK-6. New product name: type VI secretion system protein TssK-6. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-6 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-3 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34665 Burkholderia cenocepacia K56-2Valvano New gene name: ptwF. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1106A_A206 Burkholderia pseudomallei 1106a New gene name: bopE. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1525. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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