Log of Annotation Updates

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Date Locus Tag Strain Description Submitter
Apr 30, 2018 BPSS1495 Burkholderia pseudomallei K96243 New gene name: virA. New product name: two-component regulatory system, sensor kinase VirA. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 21300775. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 21670170. New PubMed ID: 26094804. New PubMed ID: 26159714. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1403 Burkholderia pseudomallei K96243 New gene name: bpscQ. New product name: type III secretion system cytoplasmic ring protein BpscQ (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS48101 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2545296..2545503 (- strand). New start coordinate: 2545296. New end coordinate: 2545503. New gene name: ncS11. New product name: small regulatory ncRNA ncS11. New gene name synonym: ncRNA13. New product name confidence: Class 1. New PubMed ID: 29142288. New PubMed ID: 19234113. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS07140 Burkholderia dolosa AU0158 New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1496 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssB-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1404 Burkholderia pseudomallei K96243 New gene name: bpscR. New product name: type III secretion system inner membrane export apparatus protein BpscR (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS49841 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2912201..2912283 (+ strand). New start coordinate: 2912201. New end coordinate: 2912283. New gene name: ncS16. New product name: small regulatory ncRNA ncS16. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1833 Burkholderia pseudomallei K96243 New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1497 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssC-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1405 Burkholderia pseudomallei K96243 New gene name: BpscS. New product name: type III secretion system inner membrane export apparatus protein BpscS (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS51716 Burkholderia cenocepacia J2315 New ncRNA gene identified at 3297991..3298074 (- strand). New start coordinate: 3297991. New end coordinate: 3298074. New gene name: ncS25. New product name: small regulatory ncRNA ncS25. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II0544 Burkholderia thailandensis E264; ATCC 700388 New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1498 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssD-5. New gene name synonym: hcp1. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000112. New subcellular localization PMID: 21300775. New PubMed ID: 17660433. New PubMed ID: 21300775. New PubMed ID: 24595140. New PubMed ID: 21670170. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1406 Burkholderia pseudomallei K96243 New gene name: BpspV. New product name: type III secretion system secreted regulator BpspV (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS64696 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2304213..2304378 (- strand). New start coordinate: 2304213. New end coordinate: 2304378. New gene name: ncS35. New product name: small regulatory ncRNA ncS35. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_4918 Burkholderia multivorans ATCC 17616 New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1499 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssE-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1407 Burkholderia pseudomallei K96243 New gene name: bpscD. New product name: type III secretion system inner membrane ring component BpscD (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS65806 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2568766..2568918 (+ strand). New start coordinate: 2568766. New end coordinate: 2568918. New gene name: ncS37. New product name: small regulatory ncRNA ncS37. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27655 Burkholderia ambifaria AMMD New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1500 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssF-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1408 Burkholderia pseudomallei K96243 New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS41981 Burkholderia cenocepacia J2315 New ncRNA gene identified at 1179680..1179807 (+ strand). New start coordinate: 1179680. New end coordinate: 1179807. New gene name: ncS54. New product name: small regulatory ncRNA ncS54. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS20355 Burkholderia cenocepacia H111 New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1501 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssG-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1409 Burkholderia pseudomallei K96243 New gene name: sctF. New product name: type III secretion system outer rod/major needle component SctF (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS48121 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2548559..2548685 (+ strand). New start coordinate: 2548559. New end coordinate: 2548685. New gene name: ncS63. New product name: small regulatory ncRNA ncS63. New product name synonym: BTH_s39. New product name confidence: Class 1. New PubMed ID: 29142288. New PubMed ID: 24884623. New comment: Confirmed by Northern Blot. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS07610 Burkholderia cenocepacia K56-2Valvano New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1502 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssH-5. New gene name synonym: clpV-5. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1410 Burkholderia pseudomallei K96243 New gene name: bpsaB. New product name: type III secretion system chaperone protein BpsaB (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS37471 Burkholderia cenocepacia J2315 New ncRNA gene identified at 221314..221372 (+ strand). New start coordinate: 221314. New end coordinate: 221372. New gene name: ncS03. New product name: double-hairpin RNA ncS03. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCEP18194_RS34105 Burkholderia lata 383 New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1503 Burkholderia pseudomallei K96243 New product name: type VI secretion protein TssI-5. New gene name synonym: vgrG-5. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:000123. New subcellular localization PMID: 24452686. New PubMed ID: 24452686. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1592 Burkholderia pseudomallei K96243 New gene name: bpscC2. New product name: type III secretion system outer membrane ring protein / secretin BpscC2 (T3SS-2). New gene name synonym: sctC. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS38736 Burkholderia cenocepacia J2315 New ncRNA gene identified at 479440..479506 (- strand). New start coordinate: 479440. New end coordinate: 479506. New gene name: ncS05. New product name: double-hairpin RNA ncS05. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0857 Burkholderia cenocepacia J2315 New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1504 Burkholderia pseudomallei K96243 New product name: type VI secretion system-associated protein TagAB-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 24595140. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1610 Burkholderia pseudomallei K96243 New gene name: bpspB2. New product name: type III secretion system regulator BpscB (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS53446 Burkholderia cenocepacia J2315 New ncRNA gene identified at 3666557..3666648 (- strand). New start coordinate: 3666557. New end coordinate: 3666648. New gene name: ncS27. New product name: double-hairpin RNA ncS27. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS07135 Burkholderia dolosa AU0158 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4203. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1505 Burkholderia pseudomallei K96243 New product name: type VI secretion system-associated protein TagB-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1611 Burkholderia pseudomallei K96243 New gene name: bpsaB2. New product name: type III secretion system chaperone protein BpsaB2 (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS63756 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2089713..2089769 (+ strand). New start coordinate: 2089713. New end coordinate: 2089769. New gene name: ncS62. New product name: double-hairpin RNA ncS62. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1832 Burkholderia pseudomallei K96243 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4203. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1506 Burkholderia pseudomallei K96243 New product name: type VI secretion system-associated protein TagC-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1612 Burkholderia pseudomallei K96243 New gene name: sctF. New product name: type III secretion system outer rod/major needle component SctF (T3SS-2). New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_RS10711 Burkholderia thailandensis E264; ATCC 700388 New CDS gene identified at 2571843..2572394 (+ strand). New start coordinate: 2571843. New end coordinate: 2572394. New gene name: malH. New product name: MalH. New PubMed ID: 22765305. New comment: Part of the malleilactone biosynthetic gene cluster.. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II0545 Burkholderia thailandensis E264; ATCC 700388 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4203. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1507 Burkholderia pseudomallei K96243 New product name: type VI secretion system-associated protein TagD-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1613 Burkholderia pseudomallei K96243 New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0909 Burkholderia cenocepacia J2315 New gene name: ybeY. New product name: rRNA maturation RNAse YbeY. New product name confidence: Class 2. New PubMed ID: 20807199. New PubMed ID: 23638028. New PubMed ID: 19181801. New comment: .Annotation transferred from: UniprotKB:P0A898. Bart Devreese. Ghent University, Belgium
Apr 30, 2018 bglu_2g16510 Burkholderia glumae BGR1 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4203. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1508 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssJ-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1614 Burkholderia pseudomallei K96243 New gene name: bpscD2. New product name: type III secretion system inner membrane ring component BpscD2 (T3SS-2). New gene name synonym: sctD. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1228 Burkholderia pseudomallei K96243 New PubMed ID: 28003338. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_4917 Burkholderia multivorans ATCC 17616 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4203. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1509 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssK-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1615 Burkholderia pseudomallei K96243 New gene name: bpspV2. New product name: type III secretion system secreted regulator BpspV2 (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 KS03_RS20605 Burkholderia glumae ATCC 33617 New gene name: ntpR. New product name: NtpR. New product name synonym: negative regulator of toxoflavin production LysR . New product name confidence: Class 2. New PubMed ID: 28036242. New comment: .Annotation transferred from: BGLU_RS03475. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27660 Burkholderia ambifaria AMMD New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4203. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1510 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssL-5. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1616 Burkholderia pseudomallei K96243 New gene name: bpscS2. New product name: type III secretion system inner membrane export apparatus protein BpscS2 (T3SS-2). New gene name synonym: sctS. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BGL_RS03475 Burkholderia glumae PG1 New gene name: ntpR. New product name: NtpR. New product name synonym: negative regulator of toxoflavin production LysR . New product name confidence: Class 2. New PubMed ID: 28036242. New comment: .Annotation transferred from: BGLU_RS03475. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS20360 Burkholderia cenocepacia H111 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4203. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1511 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssM-5 . New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1617 Burkholderia pseudomallei K96243 New gene name: bpscR2. New product name: type III secretion system inner membrane export apparatus protein BpscR2 (T3SS-2). New gene name synonym: sctR. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 KS03_RS21965 Burkholderia glumae ATCC 33617 New gene name: tepR. New product name: toxoflavin and eps regulator, TepR. New product name confidence: Class 2. New PubMed ID: 28036242. New comment: .Annotation transferred from: BGLU_RS04835. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS07615 Burkholderia cenocepacia K56-2Valvano New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4203. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL3097 Burkholderia pseudomallei K96243 New gene name: tssM-1. New product name: type VI secretion system protein TssM-1. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-1 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1618 Burkholderia pseudomallei K96243 New gene name: bpscQ2. New product name: type III secretion system cytoplasmic ring protein BpscQ2 (T3SS-2). New gene name synonym: sctQ. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BGL_RS05055 Burkholderia glumae PG1 New gene name: tepR. New product name: toxoflavin and eps regulator, TepR. New product name confidence: Class 2. New PubMed ID: 28036242. New comment: .Annotation transferred from: BGLU_RS04835. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCEP18194_RS34100 Burkholderia lata 383 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4203. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL3098 Burkholderia pseudomallei K96243 New gene name: tagF-1. New product name: type VI secretion system-associated protein TagF-1. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-1 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1619 Burkholderia pseudomallei K96243 New gene name: bpsaP2. New product name: type III secretion system needle length protein BpsaP2 (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS17815 Burkholderia dolosa AU0158 New gene name: fixL. New product name: FixL. New product name synonym: two-component sensor protein FixL. New product name confidence: Class 1. New PubMed ID: 28046077. New PubMed ID: 24316980. New comment: .Annotation transferred from: UniProtKB:P10955. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0858 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4204. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL3099 Burkholderia pseudomallei K96243 New gene name: tagN-1. New product name: type VI secretion system-associated protein TagN-1. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-1 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1620 Burkholderia pseudomallei K96243 New gene name: bpscV2. New product name: type III secretion system export apparatus protein BpscV2 (T3SS-2). New gene name synonym: sctV. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS17810 Burkholderia dolosa AU0158 New gene name: fixJ. New product name: FixJ. New product name synonym: two-component response regulator FixJ. New product name confidence: Class 1. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P10958. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS07130 Burkholderia dolosa AU0158 New gene name: bceE. New product name: BceE. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4204. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL3100 Burkholderia pseudomallei K96243 New gene name: tssA-1. New product name: type VI secretion system protein TssA-1. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-1 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1621 Burkholderia pseudomallei K96243 New gene name: bpscU2. New product name: autoprotease, early/middle substrate switch BpscU2 (T3SS-2). New gene name synonym: sctU. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS08900 Burkholderia dolosa AU0158 New gene name: fixK. New product name: FixK. New product name confidence: Class 2. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P13295. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1831 Burkholderia pseudomallei K96243 New gene name: bceE. New product name: BceE. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4204. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL3101 Burkholderia pseudomallei K96243 New gene name: tssH-1. New product name: type VI secretion system protein TssH-1. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-1 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1622 Burkholderia pseudomallei K96243 New gene name: bpspK2. New product name: type III secretion system inner rod component BpspK2 (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0049 Burkholderia cenocepacia J2315 New gene name: fixK. New product name: FixK. New product name confidence: Class 2. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P13295. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II0546 Burkholderia thailandensis E264; ATCC 700388 New gene name: bceE. New product name: BceE. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4204. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL3102 Burkholderia pseudomallei K96243 New gene name: tssG-1. New product name: type VI secretion system protein TssG-1. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-1 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1623 Burkholderia pseudomallei K96243 New gene name: bpspJ2. New product name: type III secretion system inner rod component BpspJ2 (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3311 Burkholderia cenocepacia J2315 New gene name: bcnA. New product name: BcnA. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000279. New subcellular localization PMID: 28292982. New PubMed ID: 28292982. New comment: Miguel Valvano, Queen's University of Belfast
Apr 30, 2018 bglu_2g16500 Burkholderia glumae BGR1 New gene name: bceE. New product name: BceE. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4204. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL3103 Burkholderia pseudomallei K96243 New gene name: tssF-1. New product name: type VI secretion system protein TssF-1. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-1 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1624 Burkholderia pseudomallei K96243 New gene name: bpscJ2. New product name: type III secretion system inner membrane ring component BpscJ2 (T3SS-2). New gene name synonym: sctJ. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3310 Burkholderia cenocepacia J2315 New gene name: bcnB. New product name: BcnB. New product name confidence: Class 1. New PubMed ID: 28292982. New comment: Miguel Valvano, Queen's University of Belfast
Apr 30, 2018 Bmul_4916 Burkholderia multivorans ATCC 17616 New gene name: bceE. New product name: BceE. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4204. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL3104 Burkholderia pseudomallei K96243 New gene name: tssE-1. New product name: type VI secretion system protein TssE-1. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-1 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1625 Burkholderia pseudomallei K96243 New gene name: bpspH2. New product name: type III secretion system inner membrane component BpspH2 (T3SS-2). New gene name synonym: sctK. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2402 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27665 Burkholderia ambifaria AMMD New gene name: bceE. New product name: BceE. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4204. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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