Log of Annotation Updates

2887 annotation updates returned Previous1..3456789101112..29Next
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Date Locus Tag Strain Description Submitter
Apr 30, 2018 XF14_RS22130 Burkholderia gladioli SN82F6 New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01715 Burkholderia cenocepacia H111 New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1536 Burkholderia pseudomallei K96243 New product name: type III secretion system inner membrane export apparatus protein BsaX (T3SS-3). New gene name synonym: sctS. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BM43_RS24370 Burkholderia gladioli ATCC 10248 New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01720 Burkholderia cenocepacia H111 New gene name: tssB. New product name: type VI secretion system protein TssB. New gene name synonym: bcsL. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1537 Burkholderia pseudomallei K96243 New product name: type III secretion system inner membrane export apparatus protein BsaW (T3SS-3). New gene name synonym: sctR. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BGL01S_RS20465 Burkholderia gladioli NBRC 13700 New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01725 Burkholderia cenocepacia H111 New gene name: tssC. New product name: type VI secretion system protein TssC. New gene name synonym: bcsK. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1538 Burkholderia pseudomallei K96243 New product name: type III secretion system cystoplasmic ring protein BsaV (T3SS-3). New gene name synonym: sctQ. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1356 Burkholderia pseudomallei K96243 New product name: regulatory protein. New product name confidence: Class 1. New PubMed ID: 24927285. New PubMed ID: 22354666. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01730 Burkholderia cenocepacia H111 New gene name: tssD. New product name: type VI secretion system protein TssD. New gene name synonym: hcp. New product name synonym: hemolysin-coregulated protein Hcp. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000333. New subcellular localization PMID: 18316384. New PubMed ID: 8557353. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1539 Burkholderia pseudomallei K96243 New product name: needle length control protein BsaU (T3SS-3). New gene name synonym: sctP. New PubMed ID: 28664152. New PubMed ID: 10944190. New PubMed ID: 16714590. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. BsaU is homologous to InvJ from Salmonella which is the molecular ruler which determines the length of the T3SS needle. (PMID: 10944190). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL3393 Burkholderia pseudomallei K96243 New PubMed ID: 28890761. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01735 Burkholderia cenocepacia H111 New gene name: tssE. New product name: type VI secretion system protein TssE. New gene name synonym: bcsI. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1540 Burkholderia pseudomallei K96243 New product name: type III secretion system stalk protein BsaT (T3SS-3). New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM1493 Burkholderia cenocepacia J2315 New gene name: bceR1. New product name: two-component regulatory system response regulator BceR1. New product name confidence: Class 1. New PubMed ID: 25519693. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01740 Burkholderia cenocepacia H111 New gene name: tssF. New product name: type VI secretion system protein TssF. New gene name synonym: bcsH. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1541 Burkholderia pseudomallei K96243 New product name: type III secretion system ATPase BsaS (T3SS-3). New PubMed ID: 28664152. New PubMed ID: 25605762. New PubMed ID: 20345664. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM1494 Burkholderia cenocepacia J2315 New gene name: bceS1. New product name: two-component regulatory system sensor kinase BceS1. New product name confidence: Class 1. New PubMed ID: 25519693. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01745 Burkholderia cenocepacia H111 New gene name: tssG. New product name: type VI secretion system protein TssG. New gene name synonym: bcsG. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1542 Burkholderia pseudomallei K96243 New product name: chaperone protein BsaR (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 16164564. New PubMed ID: 14645290. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. BsaR is homologous to the Salmonella chaperone InvB which has been shown to be required for secretion of the effector proteins SopE and SopA (PMID:14645290). BsaR has been predicted to be the chaperone for BopE using a computational screen for chaperones in B. pseudomallei K96243 (PMID:16164564) but this has not been validated yet. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_2132 Burkholderia multivorans ATCC 17616 New gene name: hpnK. New product name confidence: Class 1. New PubMed ID: 22006009. New comment: Belongs to putative hopanoid biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01750 Burkholderia cenocepacia H111 New gene name: tssH. New product name: type VI secretion system protein TssH. New gene name synonym: clpV. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 19131969. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1543 Burkholderia pseudomallei K96243 New product name: type III secretion system export apparatus protein BsaQ (T3SS-3). New gene name synonym: sctV. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 18654761. New PubMed ID: 16153244. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_2133 Burkholderia multivorans ATCC 17616 New gene name: hpnJ. New product name confidence: Class 1. New PubMed ID: 22006009. New comment: Belongs to putative hopanoid biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01755 Burkholderia cenocepacia H111 New gene name: tssA. New product name: type VI secretion system protein TssA. New gene name synonym: bcsE. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1544 Burkholderia pseudomallei K96243 New product name: type III secretion system gatekeeper protein BsaP (T3SS-3). New gene name synonym: sctW. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25635268. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_2134 Burkholderia multivorans ATCC 17616 New gene name: hpnI. New product name confidence: Class 1. New PubMed ID: 22006009. New comment: Belongs to putative hopanoid biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01760 Burkholderia cenocepacia H111 New gene name: tagL. New product name: type VI secretion system-associated protein TagL. New gene name synonym: bcsD. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1545 Burkholderia pseudomallei K96243 New product name: type III secretion system outer membrane ring protein / secretin BsaO (T3SS-3). New gene name synonym: sctC. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25591178. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2710 Burkholderia cenocepacia J2315 New PubMed ID: 23761261. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01765 Burkholderia cenocepacia H111 New gene name: tagF. New product name: type VI secretion system-associated protein TagF. New gene name synonym: bcsC. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22411981. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1546 Burkholderia pseudomallei K96243 New end coordinate: 2101323. New product name: regulator of type III secretion system effector proteins BsaN (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25085508. New PubMed ID: 20345664. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. The original start codon (GTG) was replaced with an ATG that was 117 bp upstream of it (PMID:25085508). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM2738 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 23761261. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01770 Burkholderia cenocepacia H111 New gene name: tssM. New product name: type VI secretion system protein TssM. New gene name synonym: icmF. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1547 Burkholderia pseudomallei K96243 New product name: type III secretion system inner membrane ring component BsaM (T3SS-3). New gene name synonym: sctD. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 24884837. New PubMed ID: 15528446. New PubMed ID: 10944190. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2831 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 23761261. New PubMed ID: 17220310. New comment: .Annotation transferred from: UniProtKB:B4EA13. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS01775 Burkholderia cenocepacia H111 New gene name synonym: bcsA. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1548 Burkholderia pseudomallei K96243 New product name: type III secretion system outer rod/major needle component BsaL (T3SS-3). New gene name synonym: sctF. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 16631790. New PubMed ID: 17617421. New PubMed ID: 18491382. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2830 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 17220310. New comment: .Annotation transferred from: UniProtKB:B4EA15. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28215 Burkholderia cenocepacia K56-2Valvano New gene name: tssL. New product name: type VI secretion system protein TssL. New gene name synonym: bcsP. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1549 Burkholderia pseudomallei K96243 New product name: type III secretion system inner rod/minor needle component BsaK (T3SS-3). New gene name synonym: sctI. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0854 Burkholderia cenocepacia J2315 New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28220 Burkholderia cenocepacia K56-2Valvano New gene name: tssK. New product name: type VI secretion system protein TssK. New gene name synonym: bcsO. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1550 Burkholderia pseudomallei K96243 New gene name: bsaJ. New product name: type III secretion system inner membrane ring component (T3SS-3). New gene name synonym: sctJ. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS07150 Burkholderia dolosa AU0158 New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28225 Burkholderia cenocepacia K56-2Valvano New gene name: tssJ. New product name: type VI secretion system protein TssJ. New gene name synonym: bcsN. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: PDB:3RX9. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1551 Burkholderia pseudomallei K96243 New product name: type III secretion system ATPase co-factor OrgA (T3SS-3). New gene name synonym: sctK. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1835 Burkholderia pseudomallei K96243 New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28230 Burkholderia cenocepacia K56-2Valvano New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1552 Burkholderia pseudomallei K96243 New product name: type III secretion system stator protein OrgB (T3SS-3). New gene name synonym: sctL. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II0542 Burkholderia thailandensis E264; ATCC 700388 New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28235 Burkholderia cenocepacia K56-2Valvano New gene name: tssB. New product name: type VI secretion system protein TssB. New gene name synonym: bcsL. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1553 Burkholderia pseudomallei K96243 New product name: regulator of type III secretion system-3 (T3SS-3) BprP. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25085508. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 bglu_2g16540 Burkholderia glumae BGR1 New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28240 Burkholderia cenocepacia K56-2Valvano New gene name: tssC. New product name: type VI secretion system protein TssC. New gene name synonym: bcsK. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1554 Burkholderia pseudomallei K96243 New product name: regulator of type III secretion system-3 (T3SS-3) BprQ. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 27147217. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_4920 Burkholderia multivorans ATCC 17616 New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28245 Burkholderia cenocepacia K56-2Valvano New gene name: tssD. New product name: type VI secretion system protein TssD. New gene name synonym: hcp. New product name synonym: hemolysin-coregulated protein Hcp. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000333. New subcellular localization PMID: 18316384. New PubMed ID: 8557353. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1390 Burkholderia pseudomallei K96243 New gene name: bpscC. New product name: type III secretion system outer membrane ring protein / secretin BpscC (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27645 Burkholderia ambifaria AMMD New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28250 Burkholderia cenocepacia K56-2Valvano New gene name: tssE. New product name: type VI secretion system protein TssE. New gene name synonym: bcsI. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1391 Burkholderia pseudomallei K96243 New gene name: bpspB. New product name: type III secretion system regulator BpscB (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS20345 Burkholderia cenocepacia H111 New gene name: bceA. New product name: bifunctional exopolysaccharide biosynthesis protein (phosphomannose isomerase and GDP-D-mannose pyrophosphorylase) BceA. New product name confidence: Class 1. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:BCAM0854. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28255 Burkholderia cenocepacia K56-2Valvano New gene name: tssF. New product name: type VI secretion system protein TssF. New gene name synonym: bcsH. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1392 Burkholderia pseudomallei K96243 New gene name: bpscT. New product name: type III secretion system inner membrane export apparatus protein BpscT (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS07600 Burkholderia cenocepacia K56-2Valvano New gene name: bceA. New product name: bifunctional exopolysaccharide biosynthesis protein (phosphomannose isomerase and GDP-D-mannose pyrophosphorylase) BceA. New product name confidence: Class 1. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:BCAM0854. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28260 Burkholderia cenocepacia K56-2Valvano New gene name: tssG. New product name: type VI secretion system protein TssG. New gene name synonym: bcsG. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1393 Burkholderia pseudomallei K96243 New gene name: bpspD. New product name: type III secretion system stalk protein BpspD (T3SS-1). New gene name synonym: sctO. New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCEP18194_RS34115 Burkholderia lata 383 New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28265 Burkholderia cenocepacia K56-2Valvano New gene name: tssH. New product name: type VI secretion system protein TssH. New gene name synonym: clpV. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 19131969. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1394 Burkholderia pseudomallei K96243 New gene name: bpscN. New product name: type III secretion system ATPase BpscN (T3SS-1). New product name confidence: Class 1. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0856 New PubMed ID: 14637140. New PubMed ID: 15995219. New comment: Member of the bce-I gene cluster. New comment: The J2315 bceB gene nucleotide sequence exhibits a frameshift mutation which may be the cause of it's defect in cepacian EPS biosynthesis. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28270 Burkholderia cenocepacia K56-2Valvano New gene name: tssA. New product name: type VI secretion system protein TssA. New gene name synonym: bcsE. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1395 Burkholderia pseudomallei K96243 New gene name: bpscL. New product name: type III secretion system stator protein BpscL (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS07145 Burkholderia dolosa AU0158 New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New product name synonym: priming glucosyltransferase BceB. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4201. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28275 Burkholderia cenocepacia K56-2Valvano New gene name: tagL. New product name: type VI secretion system-associated protein TagL. New gene name synonym: bcsD. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1396 Burkholderia pseudomallei K96243 New gene name: bpspH. New product name: type III secretion system inner membrane component BpspH (T3SS-1). New gene name synonym: sctK. New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1834 Burkholderia pseudomallei K96243 New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28280 Burkholderia cenocepacia K56-2Valvano New gene name: tagF. New product name: type VI secretion system-associated protein TagF. New gene name synonym: bcsC. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22411981. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1397 Burkholderia pseudomallei K96243 New gene name: bpscJ. New product name: type III secretion system inner membrane ring component BpscJ (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II0543 Burkholderia thailandensis E264; ATCC 700388 New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28285 Burkholderia cenocepacia K56-2Valvano New gene name: tssM. New product name: type VI secretion system protein TssM. New gene name synonym: icmF. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1398 Burkholderia pseudomallei K96243 New gene name: bpspJ. New product name: type III secretion system inner rod component BpspJ (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 bglu_2g16530 Burkholderia glumae BGR1 New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS28290 Burkholderia cenocepacia K56-2Valvano New gene name synonym: bcsA. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1399 Burkholderia pseudomallei K96243 New gene name: BpspK. New product name: type III secretion system inner rod component BpspK (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_4919 Burkholderia multivorans ATCC 17616 New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS17890 Burkholderia cenocepacia H111 New gene name: atsR. New product name: hybrid two-component system kinase-response regulator protein AtsR. New product name confidence: Class 1. New PubMed ID: 22830644. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1400 Burkholderia pseudomallei K96243 New gene name: bpscU. New product name: autoprotease, early/middle substrate switch BpscU (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS36586 Burkholderia cenocepacia J2315 New ncRNA gene identified at 20581..20691 (+ strand). New start coordinate: 20581. New end coordinate: 20691. New gene name: ncS01. New product name: small regulatory ncRNA ncS01. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27650 Burkholderia ambifaria AMMD New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1493 Burkholderia pseudomallei K96243 New product name: type VI secretion system protein TssA-5. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1401 Burkholderia pseudomallei K96243 New gene name: bpscV. New product name: type III secretion system export apparatus protein BpscV (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS37856 Burkholderia cenocepacia J2315 New ncRNA gene identified at 292949..293053 (+ strand). New start coordinate: 292949. New end coordinate: 293053. New gene name: ncS04. New product name: small regulatory ncRNA ncS04. New product name synonym: anti-hemB. New product name confidence: Class 1. New PubMed ID: 29142288. New PubMed ID: 23282220. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 I35_RS20350 Burkholderia cenocepacia H111 New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1494 Burkholderia pseudomallei K96243 New gene name: virG. New product name: two-component regulatory system, response regulator VirG. New product name confidence: Class 1. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 21670170. New PubMed ID: 21300775. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-5 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:21670170, PMID:22007185) and by the B. mallei literature (PMID:22892068, PMID:17555434). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1402 Burkholderia pseudomallei K96243 New gene name: bpsaP. New product name: type III secretion system needle length protein BpsaP (T3SS-1). New product name confidence: Class 2. New PubMed ID: 20109238. New PubMed ID: 28664152. New PubMed ID: 21768285. New PubMed ID: 10403415. New PubMed ID: 11990489. New PubMed ID: 15621426. New comment: This gene is part of the type III secretion system T3SS-1 locus found in B. pseudomallei but not B. mallei or B. thailandensis. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS39311 Burkholderia cenocepacia J2315 New ncRNA gene identified at 603652..603910 (+ strand). New start coordinate: 603652. New end coordinate: 603910. New gene name: ncS06. New product name: small regulatory ncRNA ncS06. New gene name synonym: ncRNA7. New product name synonym: BTH_s1. New product name confidence: Class 1. New PubMed ID: 29142288. New PubMed ID: 24884623. New PubMed ID: 19234113. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0855 Burkholderia cenocepacia J2315 New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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