Log of Annotation Updates

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Date Locus Tag Strain Description Submitter
Jan 29, 2010 BCAS0333 Burkholderia cenocepacia J2315 New product name: putative siderophore receptor. New product name confidence: Class 3. Dropped gene name: orbA. Pamela A. Sokol, University of Calgary
Jan 29, 2010 BCAL1700 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New subcellular localization: Outer Membrane. New subcellular localization confidence: Class 1. New evidence reference (PMID): 10456885. New evidence reference (PMID): 11083760. Pamela A. Sokol, University of Calgary
Jan 14, 2010 Bth_I1158 Burkholderia thailandensis E264 ATCC 700388 New product name: Nucleoside kinase. New product name confidence: Class 2. New evidence reference (PMID): 19021762. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 14, 2010 Bxe_A2876 Burkholderia xenovorans LB400 New product name: Fe2+-dependent oxygenase. New product name confidence: Class 2. New evidence reference (PMID): 19754880. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 14, 2010 BCAM2632 Burkholderia cenocepacia J2315 New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 14, 2010 BCAL0274 Burkholderia cenocepacia J2315 New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 14, 2010 BCAL2021 Burkholderia cenocepacia J2315 New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 14, 2010 BCAS0223 Burkholderia cenocepacia J2315 New gene name: afcC. New product name: AfcC. New product name confidence: Class 2. New evidence reference (PMID): 9758823. Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
Jan 14, 2010 BCAS0225 Burkholderia cenocepacia J2315 New gene name: shvR. New product name: shiny variant regulator, ShvR. New product name confidence: Class 1. New evidence reference (PMID): 19761612. Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
Apr 22, 2009 Bxe_A0793 Burkholderia xenovorans LB400 New gene name: fusA. New product name confidence: Class 1. New evidence reference (PMID): 10625618. New evidence reference (PMID): 17522847. Literature review. Geoffrey L. Winsor, Simon Fraser University
Apr 22, 2009 BCAM2307 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New evidence reference (PMID): 16790782. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL3119 Burkholderia cenocepacia J2315 New product name: WbiI. New product name confidence: Class 2. New homology: 67.8% identity to whpM[P. aeruginosa PAO1]. New homology: 99% identity to WbiI[accession number AY523838]. New evidence reference (PMID): 15364998. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL1656 Burkholderia cenocepacia J2315 New product name: transcription factor SsuR. New product name confidence: Class 1. New evidence reference (PMID): 16997956. Literature review. Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland
Apr 22, 2009 BCAL0787 Burkholderia cenocepacia J2315 New gene name: sigM. New product name: sigma factor 70 SigM. New product name confidence: Class 2. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL1892 Burkholderia cenocepacia J2315 New gene name: sigL. New product name: sigma factor 70 SigL. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL0144 Burkholderia cenocepacia J2315 New gene name: sigK. New product name: sigma factor 70 SigK. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM1259 Burkholderia cenocepacia J2315 New gene name: sigJ. New product name: sigma factor 70 SigJ. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM2371 Burkholderia cenocepacia J2315 New gene name: sigI. New product name: sigma factor 70 sigI. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0918 Burkholderia cenocepacia J2315 New gene name: sigE. New product name: sigma factor 70 sigE. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL0813 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New evidence reference (PMID): 18195023. Literature review. Valvano, M. A. University of Western Ontario, London, Ontario
Apr 22, 2009 BCAM0005 Burkholderia cenocepacia J2315 New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New homology: 97% identity to repA[B. cenocepacia AU 1054]. New evidence reference (PMID): 18328098. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0004 Burkholderia cenocepacia J2315 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. cencoepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM1867 Burkholderia cenocepacia J2315 New gene name: mgtC. New product name confidence: Class 1. New evidence reference (PMID): 16988222. Literature review. Valvano, M. A. University of Western Ontario, London, Ontario
Apr 22, 2009 BCAL2829 Burkholderia cenocepacia J2315 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 1. New evidence reference (PMID): 17220310. Literature review. Valvano, M. A. University of Western Ontario, Ontario
Apr 22, 2009 BCAL0207 Burkholderia cenocepacia J2315 New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 63% identity to HppD[A. hydrophila]. New homology: 57% idenity to HppD[P. fluorescens]. New homology: 32% idenity to HppD[S. avermitilis]. New evidence reference (PMID): 17933889. Literature review. Valvano, M. A. University of Western Ontario, London, Ontario
Apr 22, 2009 BCAL2739 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New evidence reference (PMID): 10625618. New evidence reference (PMID): 17522847. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL3378 Burkholderia cenocepacia J2315 New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New evidence reference (PMID): 18057135. Literature review. Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta.
Apr 22, 2009 BCAL3486 Burkholderia cenocepacia J2315 New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0849 Burkholderia cenocepacia J2315 New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM2748 Burkholderia cenocepacia J2315 New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0001 Burkholderia cenocepacia J2315 New gene name: ecfJ. New product name: sigma factor 70 EcfJ. New product name confidence: Class 2. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL1688 Burkholderia cenocepacia J2315 New gene name: ecfI. New product name: sigma factor 70 EcfI. New product name confidence: Class 2. New evidence reference (PMID): 17784978. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM1661 Burkholderia cenocepacia J2315 New gene name: ecfH. New product name: sigma factor 70 EcfH. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL1947 Burkholderia cenocepacia J2315 New gene name: ecfG. New product name: sigma factor 70 EcfG. New product name confidence: Class 2. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL3151 Burkholderia cenocepacia J2315 New gene name: ecfF. New product name: sigma factor 70 EcfF. New product name confidence: Class 2. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL2462 Burkholderia cenocepacia J2315 New gene name: ecfE. New product name: sigma factor 70 EcfE. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL2360 Burkholderia cenocepacia J2315 New gene name: ecfD. New product name: sigma factor 70 EcfD. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL1369 Burkholderia cenocepacia J2315 New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL3478 Burkholderia cenocepacia J2315 New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL2872 Burkholderia cenocepacia J2315 New gene name: ecfA2. New product name: EcfA2. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL0998 Burkholderia cenocepacia J2315 New gene name: ecfA1. New product name: EcfA1. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL2686 Burkholderia cenocepacia J2315 New product name: transcription factor CysB. New product name confidence: Class 1. New evidence reference (PMID): 16997956. Literature review. Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland
Apr 22, 2009 BCAM0188 Burkholderia cenocepacia J2315 New gene name: cepR2. New product name: CepR2. New product name confidence: Class 1. New evidence reference (PMID): 19201791. Eoin O'Grady, University of Calgary Health Sciences Centre, Calgary, Alberta
Apr 22, 2009 BCAM1868 Burkholderia cenocepacia J2315 New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 99% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM1870 Burkholderia cenocepacia J2315 New homology: 90% identity to CepI[B. vietnamiensis G4]. New evidence reference (PMID): 17277056. Literature review. Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta
Apr 22, 2009 BCAM1870 Burkholderia cenocepacia J2315 New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New homology: 100% identity to CepI[B. cepacia K56-2] [accession number AF019654]. New evidence reference (PMID): 11402012. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0859 Burkholderia cenocepacia J2315 New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 92% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0857 Burkholderia cenocepacia J2315 New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 90% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM0379 Burkholderia cenocepacia J2315 New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 19% identity to RetS [P. aeruginosa]. New evidence reference (PMID): 18316384. Literature review. Schell, M. A. University of Georgia, Athens, Georgia
Apr 22, 2009 BCAS0222 Burkholderia cenocepacia J2315 New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 94% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823. Literature review. Schell, M. A. University of Georgia, Athens, Georgia
Sep 15, 2008 Bcep18194_C7411 New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 89% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823. Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
Sep 15, 2008 Bcep18194_C7399 New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 35% identity and 55 % similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_C7398 New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 37% identity and 56 similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_C6640 New gene name: ecfE. New product name: sigma factor 70 EcfE. New product name confidence: Class 1. New homology: 87% identity to ecfE[B. cenocepacia L2315]. New evidence reference (PMID): 1774948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_B2888 New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 79% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384. Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
Sep 15, 2008 Bcep18194_B2866 New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 36% identity and 54 % similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_B2865 New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 41% identity and 54% similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_B2282 New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New homology: 77% identity to ecfL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_B2274 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 92% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_B2272 New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 94% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_B2204 New gene name: sigE. New product name: sigma factor 70 SigE . New product name confidence: Class 1. New homology: 85% idenity to sigE[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_B1902 New gene name: sigJ. New product name: sigma factor 70 SigJ. New product name confidence: Class 1. New homology: 78% idenity to sigJ[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_B1816 New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 33% identity and 53% similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_B1379 New gene name: ecfH. New product name: sigma factor 70 EcfH. New product name confidence: Class 1. New homology: 75% identity to ecfH[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_B1053 New gene name: mgtC. New homology: 92% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep18194_B1052 New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 96% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
Sep 15, 2008 Bcep18194_B1050 New gene name: cepI. New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New homology: 91% identity to CepI[B. vietnamiensis G4]. New evidence reference (PMID): 17277056. Literature review. Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta
Sep 15, 2008 Bcep18194_B1050 New gene name: cepI. New product name: autoinducer synthase CepI. New product name confidence: Class 1. New homology: 99% identity to CepI[B. cepacia K56-2] [accession number AF019654]. New evidence reference (PMID): 11402012. Literature review. Raymond C. Lo, Simon Fraser University
Sep 15, 2008 Bcep18194_B0597 New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class . New homology: 79% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782. Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
Sep 15, 2008 Bcep18194_B0094 New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New homology: 89% identity to ecfK [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_B0004 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Sep 15, 2008 Bcep18194_A6145 New gene name: sigM. New product name: sigma factor 70 SigM. New homology: 91% identity to SigM[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_A6121 New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep18194_A5947 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcep18194_A5944 New gene name: coxG. New product name confidence: Class 2. New homology: 79% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcep18194_A5860 New gene name: fusA. New product name confidence: Class 2. New homology: 94% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep18194_A5807 New gene name: cysB. New product name: transcription factor CysB. New product name confidence: Class 1. New homology: 99.0% identity to CysB [ B. cepacia IST408]. New evidence reference (PMID): 16997956. Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
Sep 15, 2008 Bcep18194_A5765 New gene name: sodC. New product name: superoxide dismutase, copper/zinc binding SodC. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New evidence reference (PMID): 17325048. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep18194_A5593 New gene name: ecfD. New product name: sigma factor 70 EcfD. New product name confidence: Class 1. New homology: 97% identity to ecfD[B. cenocepacia J2315]. New evidence reference (PMID): 1774948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_A5121 New gene name: sigL. New product name: sigma factor 70 SigL. New homology: 84% idenitty to SigL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_A4778 New gene name: ecfI. New product name: sigma factor 70 EcfI. New product name confidence: Class 2. New homology: 90% identity to ecfI[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Sep 15, 2008 Bcep18194_A4743 New gene name: ssuR. New product name: transcription factor SsuR. New product name confidence: Class 1. New homology: 99% identity to SsuR [B. cenocepacia J2315]. New evidence reference (PMID): 16997956. Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
Sep 15, 2008 Bcep18194_A4502 New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New homology: 95% identity to ecfC[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_A4239 New gene name: ecfA1. New product name: sigma factor 70 EcfA1. New product name confidence: Class 1. New homology: 90% identity to EcfA1[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_A3984 New gene name: wbiI. New homology: 97% identity to wbiI[accession number AY523838]. New evidence reference (PMID): 15364998. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_A3906 New gene name: caiA. New product name confidence: Class 2. New homology: 95% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep18194_A3735 New gene name: fur. New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New homology: 98% identity to Fur[B. cenocepacia J2315]. New evidence reference (PMID): 18057135. Literature review. Based on article by Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta..
Sep 15, 2008 Bcep18194_A3420 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 97% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep18194_A3374 New homology: 99% identity ot SigK[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_A3204 New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 83% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_A3197 New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New homology: 87% identity to ecfB[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep1808_5262 Burkholderia vietnamiensis G4 New gene name: cepI. New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New evidence reference (PMID): 17277056. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep1808_5260 Burkholderia vietnamiensis G4 New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 94% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep1808_5259 Burkholderia vietnamiensis G4 New gene name: mgtC. New homology: 91% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep1808_4205 Burkholderia vietnamiensis G4 New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 89% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep1808_4203 Burkholderia vietnamiensis G4 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 88% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep1808_4001 Burkholderia vietnamiensis G4 New gene name: bviI. New product name: acyl-homoserine lactone synthase BviI. New product name confidence: Class 1. New evidence reference (PMID): 17277056. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep1808_2896 Burkholderia vietnamiensis G4 New product name confidence: Class 1. New homology: 89% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep1808_2731 Burkholderia vietnamiensis G4 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 89% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcep1808_2728 Burkholderia vietnamiensis G4 New gene name: coxG. New product name confidence: Class 2. New homology: 68% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
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