Potential Homo sapiens homologs of Burkholderia proteins

This analysis is based on a simple BLASTP search in which top scoring hits to Burkholderia proteins were returned. This is not a comprehensive list of all human homologs and each hit may not be the most similar protein to each Burkholderia protein. BLAST search was against Homo sapiens protein sequence database created from the 'pep' super-set of all translations resulting from Ensembl known or novel gene predictions. For BLASTP search, expect (E) value of 1e-4 was specified - default settings were used for all other arguments.

Downloaded H. sapiens protein fasta file from Ensembl (Homo_sapiens.NCBI36.45.pep.all.fa.gz)

Used Burkholderia protein sequences from burkholderia.com (2008 sequence versions) for queries.

Results

Download tab-delimited text files containing top scoring hit to each Burkholderia protein

Burkholderia ambifaria strain MC40-6

Burkholderia cenocepacia strain AU 1054

Burkholderia cenocepacia strain HI2424

Burkholderia cenocepacia strain MC0-3

Burkholderia cepacia strain AMMD

Burkholderia mallei strain ATCC 23344

Burkholderia mallei strain NCTC 10229

Burkholderia mallei strain NCTC 10247