Burkholderia ubonensis MSMB1157

Strain Overview
Organism Name Burkholderia ubonensis MSMB1157
Species Burkholderia ubonensis
Strain MSMB1157
Description/Title Pathogen: environmental/food/other sample from Burkholderia ubonensis
Annotated Genes 6854
Partial Genes 160
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1170
gyrB
806		 trpB
502		 lepA
485		 recA
469		 phaC
372		 gltB
478		 atpD
327
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001546975.1
Assembly Status latest
Scaffolds
Contigs 5
Contig N50 2933707
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449437
NCBI Taxonomy ID 101571
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Burkholderia ubonensis strain MSMB1157 chromosome 1, complete sequence, whole genome shotgun sequence.
Burkholderia ubonensis strain MSMB1157 chromosome 2, complete sequence, whole genome shotgun sequence.
Burkholderia ubonensis strain MSMB1157 MSMB1157WGS_3, whole genome shotgun sequence.
Burkholderia ubonensis strain MSMB1157 MSMB1157WGS_4, whole genome shotgun sequence.
Burkholderia ubonensis strain MSMB1157 MSMB1157WGS_5, whole genome shotgun sequence.

Annotated Features

Feature Count
gene 6854
CDS 6759
pseudo 209
tRNA 73
rRNA 18
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2864
Cytoplasmic Membrane 1383
Periplasmic 220
Outer Membrane 166
Extracellular 90
Unknown 1829
Unknown (This protein may have multiple localization sites) 208
Flagellar 14
Fimbrial 10
T3SS 6

Replicons

5 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF