Burkholderia sp. TSV85 TSV85

Strain Overview
Organism Name Burkholderia sp. TSV85 TSV85
Species Burkholderia sp. TSV85
Strain TSV85
Description/Title Pathogen: environmental/food/other sample from Burkholderia sp. TSV85
Annotated Genes 4627
Partial Genes 133
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Townsville
Isolation Source water
Latitude/Longitude 19.257622 S 146.793389 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001523725.1
Assembly Status latest
Scaffolds
Contigs 60
Contig N50 242179
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449218
NCBI Taxonomy ID 1385593
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 4627
CDS 4570
pseudo 144
tRNA 50
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 1991
Cytoplasmic Membrane 921
Periplasmic 139
Outer Membrane 100
Extracellular 68
Unknown 1208
Unknown (This protein may have multiple localization sites) 143
Flagellar 21
Fimbrial 1
T3SS 1

Replicons

60 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF