Burkholderia pseudomallei MSHR1328

Strain Overview
Organism Name Burkholderia pseudomallei MSHR1328
Species Burkholderia pseudomallei
Strain MSHR1328
Description/Title Sample from Burkholderia pseudomallei MSHR1328
Annotated Genes 5960
Partial Genes 39
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name Australia
Isolation Source sputum
Sample Provider
Name
E-mail
Institution Los Alamos National Laboratory, Genome Science
Date Collected 2001

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bpseudomallei 259
narK
8		 ndh
11		 ace
1		 lipA
15		 gmhD
13		 gltB
6		 lepA
2
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000970935.1
Assembly Status latest
Scaffolds
Contigs 5
Contig N50 1947855
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03455786
NCBI Taxonomy ID 1249469
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Burkholderia pseudomallei MSHR1328 chromosome I, whole genome shotgun sequence.
Burkholderia pseudomallei MSHR1328 chromosome II, whole genome shotgun sequence.

Annotated Features

Feature Count
gene 5960
CDS 5887
pseudo 142
tRNA 60
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2471
Cytoplasmic Membrane 1206
Periplasmic 203
Outer Membrane 137
Extracellular 97
Unknown 1651
Unknown (This protein may have multiple localization sites) 164
Flagellar 32
Fimbrial 6
Host Associated 1
T3SS 3

Replicons

Name Length GC
Burkholderia pseudomallei MSHR1328 chromosome I, whole genome shotgun sequence. 3975521 bp 67.9%
Replicon details
Burkholderia pseudomallei MSHR1328 chromosome II, whole genome shotgun sequence. 3178967 bp 68.4%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF