| Strain Overview | |
|---|---|
| Organism Name | Burkholderia mallei KC_1092 |
| Species | Burkholderia mallei |
| Strain | KC_1092 |
| Description/Title | Microbe sample from Burkholderia mallei |
| Annotated Genes | 4885 |
| Partial Genes | 52 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | Iran |
| Isolation Source | Unknown |
| Sample Provider | |
|---|---|
| Name | Shannon Johnson |
| shannonj@lanl.gov | |
| Institution | Los Alamos National Laboratory |
| Date Collected | Unknown |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 2 |
| Contig N50 | 3509051 |
| Assembly Level | Chromosome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03198318 |
| NCBI Taxonomy ID | 13373 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Burkholderia mallei strain KC_1092 chromosome 1, complete sequence. | |
| Burkholderia mallei strain KC_1092 chromosome 2 sequence. |
| Feature | Count |
|---|---|
| gene | 4885 |
| CDS | 4822 |
| pseudo | 154 |
| tRNA | 55 |
| rRNA | 7 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2200 |
| Cytoplasmic Membrane | 941 |
| Periplasmic | 153 |
| Outer Membrane | 97 |
| Extracellular | 73 |
| Unknown | 1280 |
| Unknown (This protein may have multiple localization sites) | 138 |
| Flagellar | 23 |
| Fimbrial | 3 |
| Host Associated | 2 |
| T3SS | 2 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia mallei strain KC_1092 chromosome 1, complete sequence. | 3509051 bp | 68.2% |
Replicon details
|
| Burkholderia mallei strain KC_1092 chromosome 2 sequence. | 2152900 bp | 69.0% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |