Burkholderia latens RF32-BP12

Strain Overview
Organism Name Burkholderia latens RF32-BP12
Species Burkholderia latens
Strain RF32-BP12
Description/Title Pathogen: environmental/food/other sample from Burkholderia latens
Annotated Genes 5684
Partial Genes 83
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon, Pibul
Isolation Source soil
Latitude/Longitude 15.18 N 105.26 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001525985.1
Assembly Status latest
Scaffolds
Contigs 62
Contig N50 257183
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449152
NCBI Taxonomy ID 488446
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5684
CDS 5618
pseudo 83
tRNA 58
ncRNA 4
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2455
Cytoplasmic Membrane 1255
Periplasmic 195
Outer Membrane 135
Extracellular 69
Unknown 1344
Unknown (This protein may have multiple localization sites) 171
Flagellar 24
Fimbrial 7
T3SS 4

Replicons

62 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF