Burkholderia glumae ATCC 33617

Strain Overview
Organism Name Burkholderia glumae LMG 2196 = ATCC 33617
Species Burkholderia glumae
Strain ATCC 33617
Description/Title Microbe sample from Burkholderia glumae ATCC 33617
Annotated Genes 5624
Partial Genes 87
Host Information
Host Species Taxonomic Name
Geographic Location
Location Name Japan: Ehime
Isolation Source Oryza sativa, grain
Sample Provider
Name Shannon Johnson
E-mail shannonj@lanl.gov
Institution Los Alamos National Laboratory
Date Collected 1967

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03012983
NCBI Taxonomy ID 1176492
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Burkholderia glumae LMG 2196 = ATCC 33617 chromosome I, complete sequence.
Burkholderia glumae LMG 2196 = ATCC 33617 chromosome II, complete sequence.
Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_1, complete sequence.
Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_2, complete sequence.

Annotated Features

Feature Count
gene 5624
CDS 5544
pseudo 121
tRNA 66
rRNA 13
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2417
Cytoplasmic Membrane 1140
Periplasmic 152
Outer Membrane 109
Extracellular 86
Unknown 1488
Unknown (This protein may have multiple localization sites) 152
Flagellar 24
Fimbrial 5
T3SS 2

Replicons

Name Length GC
Burkholderia glumae LMG 2196 = ATCC 33617 chromosome I, complete sequence. 3659771 bp 68.2%
Replicon details
Burkholderia glumae LMG 2196 = ATCC 33617 chromosome II, complete sequence. 2820414 bp 68.8%
Replicon details
Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_1, complete sequence. 196020 bp 63.8%
Replicon details
Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_2, complete sequence. 144522 bp 61.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF