Strain Overview | |
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Organism Name | Burkholderia glumae LMG 2196 = ATCC 33617 |
Species | Burkholderia glumae |
Strain | ATCC 33617 |
Description/Title | Microbe sample from Burkholderia glumae ATCC 33617 |
Annotated Genes | 5624 |
Partial Genes | 87 |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location | |
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Location Name | Japan: Ehime |
Isolation Source | Oryza sativa, grain |
Sample Provider | |
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Name | Shannon Johnson |
shannonj@lanl.gov | |
Institution | Los Alamos National Laboratory |
Date Collected | 1967 |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03012983 |
NCBI Taxonomy ID | 1176492 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 5624 |
CDS | 5544 |
pseudo | 121 |
tRNA | 66 |
rRNA | 13 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2417 |
Cytoplasmic Membrane | 1140 |
Periplasmic | 152 |
Outer Membrane | 109 |
Extracellular | 86 |
Unknown | 1488 |
Unknown (This protein may have multiple localization sites) | 152 |
Flagellar | 24 |
Fimbrial | 5 |
T3SS | 2 |
Name | Length | GC | |
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Burkholderia glumae LMG 2196 = ATCC 33617 chromosome I, complete sequence. | 3659771 bp | 68.2% |
Replicon details
|
Burkholderia glumae LMG 2196 = ATCC 33617 chromosome II, complete sequence. | 2820414 bp | 68.8% |
Replicon details
|
Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_1, complete sequence. | 196020 bp | 63.8% |
Replicon details
|
Burkholderia glumae LMG 2196 = ATCC 33617 plasmid pBIN_2, complete sequence. | 144522 bp | 61.2% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |