Burkholderia gladioli SN82F6

Strain Overview
Organism Name Burkholderia gladioli SN82F6
Species Burkholderia gladioli
Strain SN82F6
Description/Title Pathogen: clinical or host-associated sample from Burkholderia gladioli
Annotated Genes 6747
Partial Genes 569
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Age 48 years
Host Species Disease acute sinusitis
Geographic Location
Location Name USA: California, San Francisco
Isolation Source ethmoid sinus
Latitude/Longitude 37.7633 N 122.4585 W
Sample Provider
Name Alex Greninger
E-mail gerbix@gmail.com
Institution UCSF
Date Collected 20-Jul-2002

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 732
Contig N50 34800
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03480622
NCBI Taxonomy ID 28095
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6747
CDS 6688
pseudo 693
tRNA 54
rRNA 4
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3002
Cytoplasmic Membrane 1414
Periplasmic 210
Outer Membrane 154
Extracellular 96
Unknown 1608
Unknown (This protein may have multiple localization sites) 203
Flagellar 8
Fimbrial 3
Host Associated 1
T3SS 2

Replicons

330 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF