Strain Overview | |
---|---|
Organism Name | Burkholderia gladioli SN82F6 |
Species | Burkholderia gladioli |
Strain | SN82F6 |
Description/Title | Pathogen: clinical or host-associated sample from Burkholderia gladioli |
Annotated Genes | 6747 |
Partial Genes | 569 |
Host Information | |
---|---|
Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Age | 48 years |
Host Species Disease | acute sinusitis |
Geographic Location | |
---|---|
Location Name | USA: California, San Francisco |
Isolation Source | ethmoid sinus |
Latitude/Longitude | 37.7633 N 122.4585 W |
Sample Provider | |
---|---|
Name | Alex Greninger |
gerbix@gmail.com | |
Institution | UCSF |
Date Collected | 20-Jul-2002 |
Database | Scheme | Sequence Type | Alleles | |
---|---|---|---|---|
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 732 |
Contig N50 | 34800 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMN03480622 |
NCBI Taxonomy ID | 28095 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
---|---|
gene | 6747 |
CDS | 6688 |
pseudo | 693 |
tRNA | 54 |
rRNA | 4 |
ncRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 3002 |
Cytoplasmic Membrane | 1414 |
Periplasmic | 210 |
Outer Membrane | 154 |
Extracellular | 96 |
Unknown | 1608 |
Unknown (This protein may have multiple localization sites) | 203 |
Flagellar | 8 |
Fimbrial | 3 |
Host Associated | 1 |
T3SS | 2 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |