Strain Overview | |
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Organism Name | Burkholderia gladioli 3848s-5 |
Species | Burkholderia gladioli |
Strain | 3848s-5 |
Description/Title | Sample from Burkholderia gladioli 3848s-5 |
Annotated Genes | 6381 |
Partial Genes | 1375 |
Host Information | |
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Host Species Taxonomic Name | rice |
Host Species Common Name | rice |
Geographic Location | |
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Location Name | Colombia |
Sample Provider | |
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Name | |
johnston@ncbi.nlm.nih.gov | |
Institution | |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 1147 |
Contig N50 | 13124 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02469644 |
NCBI Taxonomy ID | 1263856 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6381 |
CDS | 6329 |
pseudo | 969 |
tRNA | 48 |
rRNA | 3 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2827 |
Cytoplasmic Membrane | 1358 |
Periplasmic | 198 |
Outer Membrane | 144 |
Extracellular | 91 |
Unknown | 1519 |
Unknown (This protein may have multiple localization sites) | 191 |
Flagellar | 18 |
Fimbrial | 6 |
Host Associated | 1 |
T3SS | 1 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |