Burkholderia diffusa MSMB583WGS

Strain Overview
Organism Name Burkholderia diffusa MSMB583WGS
Species Burkholderia diffusa
Strain MSMB583WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia diffusa
Annotated Genes 5912
Partial Genes 100
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001533185.1
Assembly Status latest
Scaffolds
Contigs 99
Contig N50 173479
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449606
NCBI Taxonomy ID 488732
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5912
CDS 5846
pseudo 108
tRNA 59
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2611
Cytoplasmic Membrane 1258
Periplasmic 215
Outer Membrane 130
Extracellular 81
Unknown 1389
Unknown (This protein may have multiple localization sites) 165
Flagellar 23
Fimbrial 5
T3SS 2

Replicons

99 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF