Burkholderia diffusa MSMB1060

Strain Overview
Organism Name Burkholderia diffusa MSMB1060
Species Burkholderia diffusa
Strain MSMB1060
Description/Title Pathogen: environmental/food/other sample from Burkholderia diffusa
Annotated Genes 5980
Partial Genes 82
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source water
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001524705.1
Assembly Status latest
Scaffolds
Contigs 58
Contig N50 263566
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449284
NCBI Taxonomy ID 488732
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5980
CDS 5908
pseudo 90
tRNA 64
rRNA 4
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2593
Cytoplasmic Membrane 1289
Periplasmic 219
Outer Membrane 143
Extracellular 92
Unknown 1402
Unknown (This protein may have multiple localization sites) 174
Flagellar 38
Fimbrial 10
T3SS 2

Replicons

58 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF