Burkholderia diffusa MSMB0010

Strain Overview
Organism Name Burkholderia diffusa MSMB0010
Species Burkholderia diffusa
Strain MSMB0010
Description/Title Pathogen: environmental/food/other sample from Burkholderia diffusa
Annotated Genes 5980
Partial Genes 105
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source water
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2002

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001524385.1
Assembly Status latest
Scaffolds
Contigs 71
Contig N50 273239
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449263
NCBI Taxonomy ID 488732
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5980
CDS 5908
pseudo 106
tRNA 59
rRNA 9
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2634
Cytoplasmic Membrane 1266
Periplasmic 216
Outer Membrane 144
Extracellular 88
Unknown 1396
Unknown (This protein may have multiple localization sites) 168
Flagellar 21
Fimbrial 8
T3SS 2

Replicons

71 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF