Burkholderia diffusa MSMB866

Strain Overview
Organism Name Burkholderia diffusa MSMB866
Species Burkholderia diffusa
Strain MSMB866
Description/Title Pathogen: environmental/food/other sample from Burkholderia diffusa
Annotated Genes 5954
Partial Genes 69
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 58
Contig N50 242454
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449187
NCBI Taxonomy ID 488732
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5954
CDS 5886
pseudo 66
tRNA 59
rRNA 5
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2610
Cytoplasmic Membrane 1292
Periplasmic 214
Outer Membrane 136
Extracellular 87
Unknown 1378
Unknown (This protein may have multiple localization sites) 173
Flagellar 22
Fimbrial 9
T3SS 2

Replicons

58 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF