Burkholderia diffusa RF8-non_BP2

Strain Overview
Organism Name Burkholderia diffusa RF8-non_BP2
Species Burkholderia diffusa
Strain RF8-non_BP2
Description/Title Pathogen: environmental/food/other sample from Burkholderia diffusa
Annotated Genes 5150
Partial Genes 58
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon, Trakam
Isolation Source soil
Latitude/Longitude 15.64 N 105.03 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001522375.1
Assembly Status latest
Scaffolds
Contigs 51
Contig N50 263501
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449136
NCBI Taxonomy ID 488732
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5150
CDS 5086
pseudo 58
tRNA 54
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2297
Cytoplasmic Membrane 1096
Periplasmic 193
Outer Membrane 114
Extracellular 69
Unknown 1173
Unknown (This protein may have multiple localization sites) 148
Flagellar 22
Fimbrial 6
T3SS 2

Replicons

51 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF