Burkholderia cepacia MSMB1533WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1533WGS
Species Burkholderia cepacia
Strain MSMB1533WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 6436
Partial Genes 83
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 795
atpD
4		 gltB
386		 trpB
388		 recA
103		 phaC
1		 lepA
400		 gyrB
572
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001536795.1
Assembly Status latest
Scaffolds
Contigs 49
Contig N50 313203
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449505
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6436
CDS 6369
pseudo 87
tRNA 60
rRNA 3
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2754
Cytoplasmic Membrane 1376
Periplasmic 228
Outer Membrane 156
Extracellular 81
Unknown 1582
Unknown (This protein may have multiple localization sites) 200
Flagellar 8
Fimbrial 3

Replicons

49 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF