Burkholderia cepacia MSMB724WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB724WGS
Species Burkholderia cepacia
Strain MSMB724WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7286
Partial Genes 131
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2006

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1596
trpB
21		 lepA
646		 recA
37		 gyrB
48		 atpD
75		 phaC
3		 gltB
58
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001533445.1
Assembly Status latest
Scaffolds
Contigs 128
Contig N50 277352
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449633
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7286
CDS 7219
pseudo 125
tRNA 59
rRNA 4
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3102
Cytoplasmic Membrane 1595
Periplasmic 239
Outer Membrane 180
Extracellular 94
Unknown 1787
Unknown (This protein may have multiple localization sites) 230
Flagellar 9
Fimbrial 2

Replicons

128 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF