Burkholderia cepacia MSMB1228WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1228WGS
Species Burkholderia cepacia
Strain MSMB1228WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7557
Partial Genes 137
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1611
phaC
95
lepA
591
recA
551
atpD
6
gltB
701
trpB
641
gyrB
1045
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 95
Contig N50 244253
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449556
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7557
CDS 7491
pseudo 134
tRNA 57
rRNA 5
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3198
Cytoplasmic Membrane 1623
Periplasmic 244
Outer Membrane 187
Extracellular 108
Unknown 1925
Unknown (This protein may have multiple localization sites) 212
Flagellar 11
Fimbrial 7

Replicons

95 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF