Burkholderia cepacia MSMB2177WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB2177WGS
Species Burkholderia cepacia
Strain MSMB2177WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7277
Partial Genes 110
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1595
trpB
644		 phaC
39		 gyrB
418		 gltB
182		 atpD
531		 lepA
108		 recA
37
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001532705.1
Assembly Status latest
Scaffolds
Contigs 79
Contig N50 235737
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449578
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7277
CDS 7213
pseudo 107
tRNA 57
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3106
Cytoplasmic Membrane 1586
Periplasmic 245
Outer Membrane 179
Extracellular 100
Unknown 1785
Unknown (This protein may have multiple localization sites) 219
Flagellar 8
Fimbrial 8

Replicons

79 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF