Burkholderia cepacia MSMB2099WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB2099WGS
Species Burkholderia cepacia
Strain MSMB2099WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7230
Partial Genes 102
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2013

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1604
atpD
4
lepA
658
recA
103
trpB
21
phaC
499
gyrB
1054
gltB
707
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 70
Contig N50 403064
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449534
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7230
CDS 7160
pseudo 100
tRNA 61
rRNA 5
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3091
Cytoplasmic Membrane 1578
Periplasmic 245
Outer Membrane 175
Extracellular 92
Unknown 1752
Unknown (This protein may have multiple localization sites) 234
Flagellar 7
Fimbrial 2

Replicons

70 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF