Burkholderia cepacia MSMB1333WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1333WGS
Species Burkholderia cepacia
Strain MSMB1333WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7369
Partial Genes 104
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1602
gltB
455
atpD
235
trpB
53
lepA
595
phaC
3
gyrB
1031
recA
103
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 78
Contig N50 263833
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449470
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7369
CDS 7288
pseudo 104
tRNA 66
rRNA 11
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3125
Cytoplasmic Membrane 1583
Periplasmic 243
Outer Membrane 184
Extracellular 92
Unknown 1841
Unknown (This protein may have multiple localization sites) 227
Flagellar 9
Fimbrial 2

Replicons

78 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF