Burkholderia cepacia NBRC 14074

Strain Overview
Organism Name Burkholderia cepacia NBRC 14074
Species Burkholderia cepacia
Strain NBRC 14074
Description/Title Human metagenome DNA sample from a female participant in the dbGaP study "Diet, Genetic Factors, and the Gut Microbiome in Crohn's Disease"
Annotated Genes 7485
Partial Genes 158
Host Information
Host Species Taxonomic Name
Geographic Location
Location Name NA
Latitude/Longitude NA
Environmental Feature (?) Plant
Environmental Material (?) Onion, Allium cepa
Sample Provider
Name
E-mail
Institution National Institute of Technology and Evaluation Biological Resource Center
Date Collected NA

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 10
trpB
48
gltB
4
atpD
5
phaC
4
recA
4
gyrB
44
lepA
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 110
Contig N50 173463
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMD00018762
NCBI Taxonomy ID 646099
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7485
CDS 7414
pseudo 154
tRNA 61
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3163
Cytoplasmic Membrane 1585
Periplasmic 239
Outer Membrane 180
Extracellular 102
Unknown 1931
Unknown (This protein may have multiple localization sites) 221
Flagellar 1

Replicons

110 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF