Strain Overview | |
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Organism Name | Burkholderia cepacia NBRC 14074 |
Species | Burkholderia cepacia |
Strain | NBRC 14074 |
Description/Title | Human metagenome DNA sample from a female participant in the dbGaP study "Diet, Genetic Factors, and the Gut Microbiome in Crohn's Disease" |
Annotated Genes | 7485 |
Partial Genes | 158 |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location | |
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Location Name | NA |
Latitude/Longitude | NA |
Environmental Feature (?) | Plant |
Environmental Material (?) | Onion, Allium cepa |
Sample Provider | |
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Name | |
Institution | National Institute of Technology and Evaluation Biological Resource Center |
Date Collected | NA |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | bcc | 10 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 110 |
Contig N50 | 173463 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMD00018762 |
NCBI Taxonomy ID | 646099 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 7485 |
CDS | 7414 |
pseudo | 154 |
tRNA | 61 |
rRNA | 6 |
ncRNA | 3 |
tmRNA | 1 |
Localization | Count |
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Cytoplasmic | 3163 |
Cytoplasmic Membrane | 1585 |
Periplasmic | 239 |
Outer Membrane | 180 |
Extracellular | 102 |
Unknown | 1931 |
Unknown (This protein may have multiple localization sites) | 221 |
Flagellar | 1 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |