Burkholderia cepacia MSMB1055WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1055WGS
Species Burkholderia cepacia
Strain MSMB1055WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7349
Partial Genes 110
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1591
lepA
651
recA
2
trpB
48
atpD
2
gltB
386
phaC
62
gyrB
1040
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 80
Contig N50 240658
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449415
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7349
CDS 7279
pseudo 122
tRNA 57
rRNA 9
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3166
Cytoplasmic Membrane 1585
Periplasmic 238
Outer Membrane 190
Extracellular 104
Unknown 1782
Unknown (This protein may have multiple localization sites) 221
Flagellar 11
Fimbrial 5

Replicons

80 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF