Burkholderia cepacia MSMB2027WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB2027WGS
Species Burkholderia cepacia
Strain MSMB2027WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 6112
Partial Genes 77
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1594
atpD
75		 lepA
3		 recA
37		 gltB
195		 gyrB
48		 trpB
21		 phaC
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001528485.1
Assembly Status latest
Scaffolds
Contigs 56
Contig N50 376370
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449400
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6112
CDS 6045
pseudo 78
tRNA 57
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2644
Cytoplasmic Membrane 1357
Periplasmic 221
Outer Membrane 148
Extracellular 82
Unknown 1418
Unknown (This protein may have multiple localization sites) 183
Flagellar 9
Fimbrial 1

Replicons

56 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF