Burkholderia cepacia MSMB1824WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1824WGS
Species Burkholderia cepacia
Strain MSMB1824WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7303
Partial Genes 97
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1590
recA
1		 atpD
533		 lepA
658		 trpB
21		 gltB
455		 gyrB
1058		 phaC
500
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001526905.1
Assembly Status latest
Scaffolds
Contigs 64
Contig N50 355900
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449377
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7303
CDS 7239
pseudo 109
tRNA 57
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3103
Cytoplasmic Membrane 1585
Periplasmic 251
Outer Membrane 179
Extracellular 99
Unknown 1798
Unknown (This protein may have multiple localization sites) 232
Flagellar 7
Fimbrial 2

Replicons

64 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF