| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cepacia INT3-BP104 |
| Species | Burkholderia cepacia |
| Strain | INT3-BP104 |
| Description/Title | Pathogen: environmental/food/other sample from Burkholderia cepacia |
| Annotated Genes | 7573 |
| Partial Genes | 170 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | unknown |
| Geographic Location | |
|---|---|
| Location Name | Thailand: Ubon |
| Isolation Source | soil |
| Latitude/Longitude | 15.42 N 104.95 E |
| Sample Provider | |
|---|---|
| Name | Jason Sahl |
| jasonsahl@gmail.com | |
| Institution | Northern Arizona University |
| Date Collected | 2007 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 1613 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 135 |
| Contig N50 | 268908 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03449164 |
| NCBI Taxonomy ID | 292 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 7573 |
| CDS | 7505 |
| pseudo | 170 |
| tRNA | 61 |
| rRNA | 3 |
| ncRNA | 3 |
| tmRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3238 |
| Cytoplasmic Membrane | 1652 |
| Periplasmic | 250 |
| Outer Membrane | 187 |
| Extracellular | 98 |
| Unknown | 1860 |
| Unknown (This protein may have multiple localization sites) | 227 |
| Flagellar | 9 |
| Fimbrial | 5 |
| T3SS | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |