Burkholderia cepacia MSMB1129

Strain Overview
Organism Name Burkholderia cepacia MSMB1129
Species Burkholderia cepacia
Strain MSMB1129
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7244
Partial Genes 111
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source water
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1584
trpB
639
atpD
1
recA
1
lepA
585
gltB
699
gyrB
1043
phaC
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 68
Contig N50 236589
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449286
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7244
CDS 7176
pseudo 119
tRNA 60
rRNA 4
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3100
Cytoplasmic Membrane 1588
Periplasmic 242
Outer Membrane 182
Extracellular 96
Unknown 1746
Unknown (This protein may have multiple localization sites) 228
Flagellar 9
Fimbrial 4

Replicons

68 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF