Burkholderia cepacia MSMB1224

Strain Overview
Organism Name Burkholderia cepacia MSMB1224
Species Burkholderia cepacia
Strain MSMB1224
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7409
Partial Genes 121
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1593
gyrB
1049
atpD
2
recA
37
gltB
704
trpB
48
lepA
1
phaC
496
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 83
Contig N50 226468
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449288
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7409
CDS 7339
pseudo 128
tRNA 62
rRNA 4
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3172
Cytoplasmic Membrane 1588
Periplasmic 244
Outer Membrane 189
Extracellular 105
Unknown 1830
Unknown (This protein may have multiple localization sites) 219
Flagellar 21
Fimbrial 5

Replicons

83 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF