Strain Overview | |
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Organism Name | Burkholderia cepacia MSMB1224 |
Species | Burkholderia cepacia |
Strain | MSMB1224 |
Description/Title | Pathogen: environmental/food/other sample from Burkholderia cepacia |
Annotated Genes | 7409 |
Partial Genes | 121 |
Host Information | |
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Host Species Taxonomic Name | unknown |
Geographic Location | |
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Location Name | Australia: Northern Territory |
Isolation Source | soil |
Latitude/Longitude | 19.49 S 132.55 E |
Sample Provider | |
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Name | Jason Sahl |
jasonsahl@gmail.com | |
Institution | Northern Arizona University |
Date Collected | 2011 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bcc | 1593 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 83 |
Contig N50 | 226468 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03449288 |
NCBI Taxonomy ID | 292 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 7409 |
CDS | 7339 |
pseudo | 128 |
tRNA | 62 |
rRNA | 4 |
ncRNA | 3 |
tmRNA | 1 |
Localization | Count |
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Cytoplasmic | 3172 |
Cytoplasmic Membrane | 1588 |
Periplasmic | 244 |
Outer Membrane | 189 |
Extracellular | 105 |
Unknown | 1830 |
Unknown (This protein may have multiple localization sites) | 219 |
Flagellar | 21 |
Fimbrial | 5 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |