Burkholderia cepacia FL-4-2-10-S1-D0

Strain Overview
Organism Name Burkholderia cepacia FL-4-2-10-S1-D0
Species Burkholderia cepacia
Strain FL-4-2-10-S1-D0
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7515
Partial Genes 154
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name USA: Brevard, FL
Isolation Source soil
Latitude/Longitude 28.6639742042617 N 80.9110868133791 W
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 962
gyrB
3		 recA
113		 trpB
3		 gltB
52		 atpD
6		 phaC
5		 lepA
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001523985.1
Assembly Status latest
Scaffolds
Contigs 100
Contig N50 236286
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449237
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7515
CDS 7448
pseudo 159
tRNA 59
rRNA 4
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3213
Cytoplasmic Membrane 1605
Periplasmic 248
Outer Membrane 187
Extracellular 101
Unknown 1878
Unknown (This protein may have multiple localization sites) 223
Flagellar 9
Fimbrial 7

Replicons

100 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF