Burkholderia cepacia INT25-BP2

Strain Overview
Organism Name Burkholderia cepacia INT25-BP2
Species Burkholderia cepacia
Strain INT25-BP2
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7503
Partial Genes 178
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon
Isolation Source soil
Latitude/Longitude 15.42 N 104.95 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1606
atpD
1		 gyrB
1036		 gltB
386		 phaC
490		 lepA
1		 trpB
21		 recA
325
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001523085.1
Assembly Status latest
Scaffolds
Contigs 134
Contig N50 211033
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449182
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7503
CDS 7439
pseudo 179
tRNA 57
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3231
Cytoplasmic Membrane 1623
Periplasmic 248
Outer Membrane 184
Extracellular 99
Unknown 1843
Unknown (This protein may have multiple localization sites) 219
Flagellar 9
Fimbrial 6
T3SS 2

Replicons

134 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF