Burkholderia cepacia INT3-BP157

Strain Overview
Organism Name Burkholderia cepacia INT3-BP157
Species Burkholderia cepacia
Strain INT3-BP157
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7594
Partial Genes 171
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon
Isolation Source soil
Latitude/Longitude 15.42 N 104.95 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1613
gltB
386
atpD
1
lepA
649
trpB
21
gyrB
1037
phaC
3
recA
593
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 129
Contig N50 291209
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449177
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7594
CDS 7528
pseudo 177
tRNA 59
rRNA 3
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3239
Cytoplasmic Membrane 1649
Periplasmic 252
Outer Membrane 187
Extracellular 99
Unknown 1879
Unknown (This protein may have multiple localization sites) 229
Flagellar 9
Fimbrial 5
T3SS 2

Replicons

129 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF