Burkholderia cepacia INT3-BP142

Strain Overview
Organism Name Burkholderia cepacia INT3-BP142
Species Burkholderia cepacia
Strain INT3-BP142
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7588
Partial Genes 169
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon
Isolation Source soil
Latitude/Longitude 15.42 N 104.95 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1613
gyrB
1037
trpB
21
phaC
3
lepA
649
gltB
386
atpD
1
recA
593
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 131
Contig N50 277883
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449174
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7588
CDS 7524
pseudo 181
tRNA 57
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3236
Cytoplasmic Membrane 1652
Periplasmic 251
Outer Membrane 184
Extracellular 99
Unknown 1881
Unknown (This protein may have multiple localization sites) 228
Flagellar 9
Fimbrial 5
T3SS 2

Replicons

131 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF