Burkholderia cepacia INT3-BP97

Strain Overview
Organism Name Burkholderia cepacia INT3-BP97
Species Burkholderia cepacia
Strain INT3-BP97
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7584
Partial Genes 166
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon
Isolation Source soil
Latitude/Longitude 15.42 N 104.95 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1613
trpB
21		 phaC
3		 recA
593		 gltB
386		 lepA
649		 atpD
1		 gyrB
1037
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001522305.1
Assembly Status latest
Scaffolds
Contigs 131
Contig N50 267054
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449160
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7584
CDS 7516
pseudo 174
tRNA 61
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3235
Cytoplasmic Membrane 1652
Periplasmic 250
Outer Membrane 187
Extracellular 98
Unknown 1871
Unknown (This protein may have multiple localization sites) 229
Flagellar 9
Fimbrial 5
T3SS 2

Replicons

131 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF