Burkholderia cepacia RF3-non_BP5

Strain Overview
Organism Name Burkholderia cepacia RF3-non_BP5
Species Burkholderia cepacia
Strain RF3-non_BP5
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7261
Partial Genes 110
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon, Trakam
Isolation Source soil
Latitude/Longitude 15.64 N 105.03 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1589
recA
1		 phaC
62		 gltB
195		 gyrB
1050		 lepA
656		 trpB
21		 atpD
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001521975.1
Assembly Status latest
Scaffolds
Contigs 86
Contig N50 218875
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449130
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7261
CDS 7193
pseudo 111
tRNA 58
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3108
Cytoplasmic Membrane 1588
Periplasmic 238
Outer Membrane 179
Extracellular 97
Unknown 1761
Unknown (This protein may have multiple localization sites) 229
Flagellar 8

Replicons

86 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF