Strain Overview | |
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Organism Name | Burkholderia cenocepacia CEIB S4-3 |
Species | Burkholderia cenocepacia |
Strain | CEIB S4-3 |
Description/Title | Microbe sample from Burkholderia cenocepacia |
Annotated Genes | 7922 |
Partial Genes | 128 |
Host Information |
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Geographic Location | |
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Location Name | Mexico: Tepoztlan, Morelos |
Isolation Source | agricultural soil |
Latitude/Longitude | 18.940556 N 99.11805600000002 W |
Sample Provider | |
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Name | Edgar Dantan-Gonzalez |
edantan@uaem.mx | |
Institution | Universidad Autonoma del Estado de Morelos |
Date Collected | 2011-02-08 |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | bcc | - |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 109 |
Contig N50 | 201068 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN04252993 |
NCBI Taxonomy ID | 95486 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 7922 |
CDS | 7807 |
pseudo | 158 |
tRNA | 104 |
rRNA | 7 |
ncRNA | 3 |
tmRNA | 1 |
Localization | Count |
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Cytoplasmic | 3291 |
Cytoplasmic Membrane | 1602 |
Periplasmic | 232 |
Outer Membrane | 178 |
Extracellular | 115 |
Unknown | 2176 |
Unknown (This protein may have multiple localization sites) | 229 |
Flagellar | 39 |
Fimbrial | 10 |
T3SS | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |