Burkholderia cenocepacia CEIB S4-3

Strain Overview
Organism Name Burkholderia cenocepacia CEIB S4-3
Species Burkholderia cenocepacia
Strain CEIB S4-3
Description/Title Microbe sample from Burkholderia cenocepacia
Annotated Genes 7922
Partial Genes 128
Host Information
Geographic Location
Location Name Mexico: Tepoztlan, Morelos
Isolation Source agricultural soil
Latitude/Longitude 18.940556 N 99.11805600000002 W
Sample Provider
Name Edgar Dantan-Gonzalez
E-mail edantan@uaem.mx
Institution Universidad Autonoma del Estado de Morelos
Date Collected 2011-02-08

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc -
atpD
106
phaC
78
recA
59
lepA
~113
trpB
114
gyrB
~932
gltB
124
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 109
Contig N50 201068
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04252993
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7922
CDS 7807
pseudo 158
tRNA 104
rRNA 7
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3291
Cytoplasmic Membrane 1602
Periplasmic 232
Outer Membrane 178
Extracellular 115
Unknown 2176
Unknown (This protein may have multiple localization sites) 229
Flagellar 39
Fimbrial 10
T3SS 4

Replicons

109 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF