Burkholderia cenocepacia MSMB383WGS

Strain Overview
Organism Name Burkholderia cenocepacia MSMB383WGS
Species Burkholderia cenocepacia
Strain MSMB383WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cenocepacia
Annotated Genes 6833
Partial Genes 78
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source water
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2008

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1300
gltB
11		 recA
317		 gyrB
851		 phaC
401		 trpB
79		 atpD
407		 lepA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001533105.1
Assembly Status latest
Scaffolds
Contigs 111
Contig N50 150337
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449601
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6833
CDS 6763
pseudo 85
tRNA 60
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3010
Cytoplasmic Membrane 1460
Periplasmic 225
Outer Membrane 155
Extracellular 94
Unknown 1690
Unknown (This protein may have multiple localization sites) 205
Flagellar 16
Fimbrial 2
T3SS 2

Replicons

111 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF