Burkholderia cenocepacia MSMB364WGS

Strain Overview
Organism Name Burkholderia cenocepacia MSMB364WGS
Species Burkholderia cenocepacia
Strain MSMB364WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cenocepacia
Annotated Genes 6783
Partial Genes 85
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source water
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2008

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1299
phaC
141		 recA
14		 gyrB
574		 atpD
16		 gltB
11		 trpB
147		 lepA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001531965.1
Assembly Status latest
Scaffolds
Contigs 82
Contig N50 262613
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449595
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6783
CDS 6719
pseudo 86
tRNA 55
rRNA 5
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2980
Cytoplasmic Membrane 1491
Periplasmic 225
Outer Membrane 157
Extracellular 86
Unknown 1657
Unknown (This protein may have multiple localization sites) 208
Flagellar 26
Fimbrial 2
T3SS 2

Replicons

82 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF