Burkholderia cenocepacia FL-6-2-30-S1-D2

Strain Overview
Organism Name Burkholderia cenocepacia FL-6-2-30-S1-D2
Species Burkholderia cenocepacia
Strain FL-6-2-30-S1-D2
Description/Title Pathogen: environmental/food/other sample from Burkholderia cenocepacia
Annotated Genes 6643
Partial Genes 68
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name USA: Lake, FL
Isolation Source soil
Latitude/Longitude 28.5643686675786 N 81.7763850377934 W
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 964
gyrB
487		 lepA
11		 phaC
6		 gltB
11		 recA
14		 trpB
147		 atpD
15
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001524105.1
Assembly Status latest
Scaffolds
Contigs 65
Contig N50 334074
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449245
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6643
CDS 6574
pseudo 72
tRNA 58
rRNA 7
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2915
Cytoplasmic Membrane 1447
Periplasmic 220
Outer Membrane 148
Extracellular 83
Unknown 1631
Unknown (This protein may have multiple localization sites) 201
Flagellar 16
Fimbrial 1
T3SS 2

Replicons

65 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF