| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cenocepacia ST32 isolate 1232 |
| Species | Burkholderia cenocepacia |
| Strain | ST32, isolate 1232 |
| Description/Title | Pathogen: clinical or host-associated sample from Burkholderia cenocepacia |
| Annotated Genes | 7029 |
| Partial Genes | 87 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | Cepacia syndrome |
| Geographic Location | |
|---|---|
| Location Name | Czech Republic |
| Isolation Source | sputum |
| Latitude/Longitude | 50.07 N 14.34 E |
| Sample Provider | |
|---|---|
| Name | Hynek Strnad |
| strnad@img.cas.cz | |
| Institution | Institute of Molecular Genetics of the ASCR |
| Date Collected | 1997 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 32 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03323790 |
| NCBI Taxonomy ID | 95486 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 7029 |
| CDS | 6943 |
| pseudo | 203 |
| tRNA | 67 |
| rRNA | 18 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2073 |
| Cytoplasmic Membrane | 954 |
| Periplasmic | 147 |
| Outer Membrane | 78 |
| Extracellular | 44 |
| Unknown | 1252 |
| Unknown (This protein may have multiple localization sites) | 107 |
| Flagellar | 12 |
| Fimbrial | 2 |
| T3SS | 1 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia cenocepacia strain ST32 chromosome 1, complete sequence. | 3822749 bp | 66.8% |
Replicon details
|
| Burkholderia cenocepacia strain ST32 chromosome 2, complete sequence. | 3086109 bp | 67.4% |
Replicon details
|
| Burkholderia cenocepacia strain ST32 chromosome 3, complete sequence. | 989585 bp | 67.7% |
Replicon details
|
| Burkholderia cenocepacia strain ST32 plasmid pBCEN1232, complete sequence. | 191945 bp | 61.5% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |